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[174696_s_at]

Description CEC2083_rc /REP_DB=TREMBL Accession /GB=C10208 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk122b11 : 3prime end, single read.
Cluster 6grp_total > 83      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 1.9
(-3)
A 		2.8
(-2.2)
A 		6.6
(1)
A 		8.9
(3)
A 		7
B 1.8
(-3)
A 		8
(3)
A 		4.5
(-0.4)
A 		2.6
(-2.2)
A 		6
C 23.4
(-0.5)
A 		21.1
(-0.8)
A 		3.5
(-3)
A 		51.6
(3)
A 		48
avr 9
(-1.5) 		10.6
(-0.9) 		4.9
(-3) 		21
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.9
(-1.1)
A 		4.2
(-1.6)
A 		4.3
(-1.6)
A 		2.3
(-3)
A 		10.6
(3)
A 		4.1
(-1.7)
A 		8
B 4.1
(-3)
A 		4.3
(-2.8)
A 		4.8
(-2.4)
A 		11.3
(3)
A 		5.2
(-2.1)
A 		4.5
(-2.7)
A 		7
C 1.2
(-3)
A 		5.9
(-0.1)
A 		2.2
(-2.4)
A 		6.8
(0.5)
A 		10.8
(3)
A 		3.9
(-1.3)
A 		10
avr 3.4
(-3) 		4.8
(-1.5) 		3.8
(-2.6) 		6.8
(0.7) 		8.9
(3) 		4.2
(-2.1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-2.5)
A 		0.6
(-3)
A 		1.7
(3)
A 		1.3
(0.8)
A 		1
B 0.6
(-2.6)
A 		2
(3)
A 		1
(-1)
A 		0.5
(-3)
A 		2
C 7.7
(2.2)
A 		6.1
(0.9)
A 		1.2
(-3)
A 		8.7
(3)
A 		8
avr 3
(1.6) 		2.9
(1.4) 		1.3
(-3) 		3.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.9
(-2.3)
A 		1.5
(-0.9)
A 		0.9
(-2.3)
A 		0.6
(-3)
A 		3.2
(3)
A 		1
(-2.1)
A 		3
B 1.4
(-2.3)
A 		1.4
(-2.3)
A 		1.2
(-3)
A 		3
(3)
A 		2.1
(0)
A 		1.7
(-1.3)
A 		2
C 0.4
(-3)
A 		1.8
(-0.3)
A 		0.6
(-2.6)
A 		1.4
(-1.1)
A 		3.5
(3)
A 		1.3
(-1.3)
A 		3
avr 0.9
(-3) 		1.6
(-0.9) 		0.9
(-3) 		1.7
(-0.6) 		2.9
(3) 		1.3
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174696_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21977
Sequence Type Exemplar sequence
Representative Public ID CEC2083 NCBI
Target Description CEC2083_rc /REP_DB=TREMBL Accession /GB=C10208 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk122b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071168 NCBI Caenorhabditis elegans F36F12.6 (F36F12.6) mRNA, complete cds. 11/11 A 
SNAP00000033958 ENSEMBL cdna:SNAP chromosome:CEL140:V:2097781:2098939:1 11/11 None
GENEFINDER00000033965 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2097781:2098939:1 11/11 None
F36F12.6 ENSEMBL cdna:known chromosome:CEL140:V:2097781:2098972:1 gene:F36F12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2098231-2098962(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F12.6
Entrez Gene 178689 Entrez gene
SwissProt O76401 EMBL-EBI
WormBase CE17786 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19205 Hypothetical protein F36F12.6 [Caenorhabditis elegans] ref|NP_503569.1| F36F12.6 [Caenorhabditis elegans] 1.0E-107
blast AAC19204 Hypothetical protein F36F12.5 [Caenorhabditis elegans] ref|NP_503568.1| F36F12.5 [Caenorhabditis elegans] 1.0E-97
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 7.0E-37
Sequence
Target Sequence 
>C. ELEGANS:174696_S_AT
gaccagcttgcatcagctcagggatcactgcaacttgtacgaagaccaacagtttctact
ggactgacatctcggctactggaatcaatggaatgcttttcacggatggagagccaaata
atggcattggatcaggattgtgcattgcttacggttgccagcaccccgttggttatgaac
gctttcagaactggtcaaatggatgatgttccatgcacatggcaggatcctcgcccatcc
tccgataaggctaacaagggatatgtgtgcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAGCTTGCATCAGCTCAGGGAT 391 383 38 Antisense
GCATCAGCTCAGGGATCACTGCAAC 347 309 47 Antisense
CACTGCAACTTGTACGAAGACCAAC 82 199 63 Antisense
TGTACGAAGACCAACAGTTTCTACT 695 557 73 Antisense
GATCAGGATTGTGCATTGCTTACGG 493 419 167 Antisense
TGCATTGCTTACGGTTGCCAGCACC 322 579 178 Antisense
CCAGCACCCCGTTGGTTATGAACGC 28 271 195 Antisense
GCACCCCGTTGGTTATGAACGCTTT 138 285 198 Antisense
GAACGCTTTCAGAACTGGTCAAATG 459 347 214 Antisense
GCCCATCCTCCGATAAGGCTAACAA 482 279 270 Antisense
GGCTAACAAGGGATATGTGTGCGGA 364 537 286 Antisense
Sequence Source Affymetrix Proprietary Database