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[174695_s_at]

Description CEK020F9R_rc /REP_DB=TREMBL Accession /GB=D32728 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_high_8_8 > 48      6grp_highest_nonorm > 71      6grp_total > 51      4grp_total > 62      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 440.5
(3)
P 		179.3
(-2.2)
P 		303.7
(0.3)
P 		140.1
(-3)
M 		300
B 380
(3)
P 		248.1
(-1.7)
P 		293.1
(-0.1)
P 		213
(-3)
P 		167
C 638.9
(3)
P 		296.2
(-1.2)
P 		483.7
(1.1)
P 		153
(-3)
P 		486
avr 486.5
(3) 		241.2
(-1.6) 		360.2
(0.6) 		168.7
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 231.3
(-3)
P 		302.2
(0.4)
P 		357.2
(3)
P 		246.2
(-2.3)
P 		260
(-1.6)
P 		233
(-2.9)
P 		126
B 358.2
(0.4)
P 		304.1
(-1.2)
P 		443.3
(3)
P 		351.5
(0.2)
P 		244.7
(-3)
P 		273.3
(-2.1)
P 		199
C 353.8
(1.1)
P 		276.4
(-3)
P 		289.4
(-2.3)
P 		390.3
(3)
P 		287.6
(-2.4)
P 		316.8
(-0.9)
P 		114
avr 314.4
(0) 		294.2
(-1.2) 		363.3
(3) 		329.3
(0.9) 		264.1
(-3) 		274.4
(-2.4) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 160.4
(3)
P 		38.9
(-2.2)
P 		79.4
(-0.5)
P 		20.5
(-3)
M 		140
B 121.2
(3)
P 		61.3
(-1.7)
P 		67.9
(-1.2)
P 		45.4
(-3)
P 		76
C 211.5
(3)
P 		85.1
(-1.1)
P 		168.6
(1.6)
P 		25.8
(-3)
P 		186
avr 164.4
(3) 		61.8
(-1.6) 		105.3
(0.3) 		30.6
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 42.6
(-3)
P 		107.5
(3)
P 		77.8
(0.3)
P 		62.5
(-1.2)
P 		78.4
(0.3)
P 		56.7
(-1.7)
P 		65
B 124.6
(3)
P 		101.2
(-1.5)
P 		107.6
(-0.2)
P 		93.1
(-3)
P 		99.4
(-1.8)
P 		101.9
(-1.3)
P 		32
C 131.1
(3)
P 		84.3
(-1.9)
P 		73.7
(-3)
P 		78.5
(-2.5)
P 		93.1
(-1)
P 		106.1
(0.4)
P 		57
avr 99.4
(3) 		97.7
(2.5) 		86.4
(-0.6) 		78
(-3) 		90.3
(0.4) 		88.2
(-0.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174695_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20729
Sequence Type Exemplar sequence
Representative Public ID CEK020F9R NCBI
Target Description CEK020F9R_rc /REP_DB=TREMBL Accession /GB=D32728 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062528 NCBI Caenorhabditis elegans F33G12.5 (F33G12.5) mRNA, complete cds. 11/11 A 
F33G12.5.1 ENSEMBL cdna:known chromosome:CEL140:II:5036547:5040075:-1 gene:F33G12.5 11/11 None
F33G12.5.2 ENSEMBL cdna:known chromosome:CEL140:II:5036547:5040083:-1 gene:F33G12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025576 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025581 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5036554-5037063(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33G12.5
Entrez Gene 173870 Entrez gene
SwissProt Q19989 EMBL-EBI
WormBase CE37768 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592156_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE:1583750_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.1396.1.A1_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.17444.1.S1_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.18314.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.19862.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFAAFFX.30723.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFAAFFX.30729.1.S1_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
DROSOPHILA_2:1632677_A_AT dm
DROSGENOME1:141343_AT dm
CHICKEN:GGA.14024.1.S1_S_AT golgi autoantigen, golgin subfamily a, 2 gga
CHICKEN:GGAAFFX.26348.1.S1_S_AT golgi autoantigen, golgin subfamily a, 2 gga
HG-U133_PLUS_2:211059_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A:211059_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A_2:211059_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133_PLUS_2:204384_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A:204384_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A_2:204384_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBA:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBB:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBC:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBD:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HUGENEFL:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HC-G110:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBA:RC_AA405698_AT golgi autoantigen, golgin subfamily a, 2 hs
HUGENEFL:L06147_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:G4758451_3P_S_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:G13623544_3P_S_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:HS.24049.0.S1_3P_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:35436_3P_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:211059_3P_S_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:204384_3P_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133_PLUS_2:225672_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133B:225672_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A_2:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-FOCUS:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133_PLUS_2:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95AV2:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95B:50356_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95E:70058_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95E:70061_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95D:75263_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95D:81168_AT Golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBA:AA495845_AT Golgi autoantigen, golgin subfamily a, 2 hs
MOE430A:1448625_AT golgi autoantigen, golgin subfamily a, 2 mm
MOUSE430A_2:1448625_AT golgi autoantigen, golgin subfamily a, 2 mm
MOUSE430_2:1448625_AT golgi autoantigen, golgin subfamily a, 2 mm
MG-U74BV2:163110_AT golgi autoantigen, golgin subfamily a, 2 mm
MU19KSUBA:TC19089_AT Golgi autoantigen, golgin subfamily a, 2, mRNA (cDNA clone MGC:11816 IMAGE:3596079) mm
RG-U34A:RC_AA944423_AT cis-Golgi matrix protein GM130 rn
RAE230A:1386942_AT cis-Golgi matrix protein GM130 rn
RAT230_2:1386942_AT cis-Golgi matrix protein GM130 rn
Protein Similarities
Method ID Description E-Value
blast AAK31513 Hypothetical protein F33G12.5 [Caenorhabditis elegans] ref|NP_494929.3| F33G12.5 [Caenorhabditis elegans] 0.0
blast T16244 hypothetical protein F33G12.5 - Caenorhabditis elegans 0.0
blast CAE59026 Hypothetical protein CBG02303 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174695_S_AT
gattatcggattgttctgctgacaaagataatagtgatactttcgggcaaacccaagatg
catctgttagacgaattttggaaattatttctgatatcagtagaccccaaattctacccg
ctggacaactccactgtacacaatgcattggagatcttcaagaactctgaataaaaatgt
gcataatgactttactgtaaactttcttttagcttataatgtgggtacaacttttagcta
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCGGATTGTTCTGCTGACAA 470 429 13 Antisense
ATCGGATTGTTCTGCTGACAAAGAT 369 35 17 Antisense
ATAGTGATACTTTCGGGCAAACCCA 526 19 43 Antisense
CGGGCAAACCCAAGATGCATCTGTT 707 243 56 Antisense
GCATCTGTTAGACGAATTTTGGAAA 656 307 72 Antisense
GCTGGACAACTCCACTGTACACAAT 161 295 132 Antisense
CAACTCCACTGTACACAATGCATTG 125 187 138 Antisense
AATGCATTGGAGATCTTCAAGAACT 416 165 154 Antisense
TACTGTAAACTTTCTTTTAGCTTAT 661 643 205 Antisense
ACTTTCTTTTAGCTTATAATGTGGG 220 95 213 Antisense
TAATGTGGGTACAACTTTTAGCTAA 628 633 229 Antisense
Sequence Source Affymetrix Proprietary Database