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[174693_at]

Description CEK001CYR_rc /REP_DB=TREMBL Accession /GB=D26651 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1c11 : 3prime end, single read.
Cluster 4grp_high_8_8 > 11      6grp_total > 55      4grp_total > 11      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 114.6
(-3)
P 		123.7
(-2.7)
P 		114.2
(-3)
P 		298.8
(3)
M 		185
B 96.4
(-1.6)
M 		108.3
(-0.3)
P 		83
(-3)
M 		140
(3)
P 		57
C 140.1
(3)
P 		112.4
(-1.7)
P 		104.6
(-3)
P 		135
(2.1)
A 		36
avr 117
(-1.9) 		114.8
(-2.1) 		100.6
(-3) 		191.3
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 58.1
(-3)
A 		59.1
(-2.9)
P 		85.3
(-0.9)
A 		59
(-2.9)
A 		64.6
(-2.5)
A 		134.5
(3)
P 		76
B 124.9
(3)
P 		87.6
(0.6)
P 		108.7
(2)
P 		73.6
(-0.3)
A 		31.7
(-3)
A 		94.1
(1)
P 		93
C 49.7
(-3)
A 		75.8
(-0.7)
P 		116.7
(3)
M 		96.7
(1.2)
A 		64.5
(-1.7)
P 		96.6
(1.2)
P 		67
avr 77.6
(-0.4) 		74.2
(-0.7) 		103.6
(2.5) 		76.4
(-0.5) 		53.6
(-3) 		108.4
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 41.7
(2.3)
P 		26.8
(-3)
P 		29.9
(-1.9)
P 		43.7
(3)
M 		17
B 30.7
(3)
M 		26.8
(1)
P 		19.2
(-3)
M 		29.8
(2.5)
P 		12
C 46.4
(3)
P 		32.3
(-0.6)
P 		36.5
(0.5)
P 		22.8
(-3)
A 		24
avr 39.6
(3) 		28.6
(-2.9) 		28.5
(-3) 		32.1
(-1.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 10.7
(-3)
A 		21
(-0.2)
P 		18.6
(-0.8)
A 		15
(-1.8)
A 		19.5
(-0.6)
A 		32.7
(3)
P 		22
B 43.5
(3)
P 		29.2
(0.2)
P 		26.4
(-0.4)
P 		19.5
(-1.7)
A 		12.9
(-3)
A 		35.1
(1.4)
P 		31
C 18.4
(-3)
A 		23.1
(-1)
P 		29.7
(1.9)
M 		19.5
(-2.5)
A 		20.9
(-1.9)
P 		32.3
(3)
P 		14
avr 24.2
(-0.5) 		24.4
(-0.5) 		24.9
(-0.3) 		18
(-2.9) 		17.8
(-3) 		33.4
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20418
Sequence Type Exemplar sequence
Representative Public ID CEK001CYR NCBI
Target Description CEK001CYR_rc /REP_DB=TREMBL Accession /GB=D26651 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK001CYR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK001CYR CEK001CYR_rc /REP_DB=TREMBL Accession /GB=D26651 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1c11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060056 11/11 Negative Strand Matching Probes A 
SNAP00000024319 11/11 Negative Strand Matching Probes None
GENEFINDER00000024330 11/11 Negative Strand Matching Probes None
F25H5.4.2 11/11 Negative Strand Matching Probes A 
F25H5.4.3 11/11 Negative Strand Matching Probes A 
F25H5.4.1 11/11 Negative Strand Matching Probes A 
F25H5.4.4 11/11 Negative Strand Matching Probes A 
F25H5.4.6 11/11 Negative Strand Matching Probes A 
F25H5.4.5 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9174363-9174782(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174693_AT
gttgtcaagggctgggacaccttccttgagcccctttctctttctggtgtccaaaacgat
ctggtttggcttggttccggcctcaagcgggtctcctggaagcacctgccaatggtcgaa
cacgcattgtgggaaggcttgtcctccggtgttggagcggagatcggcggtgaatccgaa
ggactcgttgacaggcaagtaagccttgacgacgaacattggagttcctgtgacctgaga
ctcctcgaaaacgtgtcctcttcttctgttcaacactccgtagatacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTCAAGGGCTGGGACACCTTCC 709 431 60 Antisense
CTTTCTCTTTCTGGTGTCCAAAACG 580 221 93 Antisense
GAAGCACCTGCCAATGGTCGAACAC 632 341 158 Antisense
CATTGTGGGAAGGCTTGTCCTCCGG 213 215 184 Antisense
GTGTTGGAGCGGAGATCGGCGGTGA 190 485 208 Antisense
CGGCGGTGAATCCGAAGGACTCGTT 343 239 224 Antisense
GGACTCGTTGACAGGCAAGTAAGCC 498 523 240 Antisense
GTAAGCCTTGACGACGAACATTGGA 360 461 258 Antisense
CATTGGAGTTCCTGTGACCTGAGAC 695 215 276 Antisense
GACCTGAGACTCCTCGAAAACGTGT 281 383 291 Antisense
TTCTGTTCAACACTCCGTAGATACC 373 687 323 Antisense
Sequence Source Affymetrix Proprietary Database