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[174692_s_at]

Description CEC1253_rc /REP_DB=TREMBL Accession /GB=C11125 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk164d11 : 3prime end, single read.
Cluster 6grp_total > 56      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 88.8
(3)
P 		37.6
(-3)
A 		48.9
(-1.7)
A 		66.4
(0.4)
P 		51
B 108.7
(3)
P 		59.6
(-3)
A 		104.1
(2.4)
A 		87.4
(0.4)
P 		49
C 96.7
(2.6)
P 		68.6
(-2.9)
A 		68
(-3)
P 		98.7
(3)
P 		31
avr 98.1
(3) 		55.3
(-3) 		73.7
(-0.4) 		84.2
(1.1) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 13.6
(-3)
A 		61.3
(2.5)
A 		25.8
(-1.6)
A 		21.2
(-2.1)
A 		32.9
(-0.8)
A 		65.7
(3)
A 		52
B 43.8
(0.3)
A 		40.6
(-0.3)
A 		31.9
(-1.8)
A 		44.5
(0.4)
A 		25
(-3)
A 		59.6
(3)
P 		35
C 44.9
(-1.2)
A 		34.8
(-2.6)
A 		60.6
(1.1)
A 		39
(-2)
A 		32.2
(-3)
A 		73.7
(3)
P 		42
avr 34.1
(-2.3) 		45.6
(-0.4) 		39.4
(-1.4) 		34.9
(-2.2) 		30
(-3) 		66.3
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 32.3
(3)
P 		8.2
(-3)
A 		12.8
(-1.9)
A 		9.7
(-2.6)
P 		24
B 34.7
(3)
P 		14.7
(-3)
A 		24.1
(-0.2)
A 		18.6
(-1.8)
P 		20
C 32
(3)
P 		19.7
(-1.8)
A 		23.7
(-0.2)
P 		16.6
(-3)
P 		15
avr 33
(3) 		14.2
(-3) 		20.2
(-1.1) 		15
(-2.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.5
(-3)
A 		21.8
(3)
A 		5.6
(-2)
A 		5.4
(-2.1)
A 		9.9
(-0.7)
A 		16
(1.2)
A 		19
B 15.2
(0.1)
A 		13.5
(-0.6)
A 		7.7
(-3)
A 		11.8
(-1.3)
A 		10.2
(-2)
A 		22.2
(3)
P 		15
C 16.6
(0.1)
A 		10.6
(-2)
A 		15.4
(-0.3)
A 		7.8
(-3)
A 		10.4
(-2.1)
A 		24.7
(3)
P 		17
avr 11.4
(-1.5) 		15.3
(0.3) 		9.6
(-2.4) 		8.3
(-3) 		10.2
(-2.1) 		21
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174692_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20561
Sequence Type Exemplar sequence
Representative Public ID CEC1253 NCBI
Target Description CEC1253_rc /REP_DB=TREMBL Accession /GB=C11125 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk164d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063530(11), NM_063531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063530 NCBI Caenorhabditis elegans T24B8.7b (T24B8.7) mRNA, complete cds. 11/11 A 
NM_063531 NCBI Caenorhabditis elegans T24B8.7a (T24B8.7) mRNA, complete cds. 11/11 A 
T24B8.7b ENSEMBL cdna:known chromosome:CEL140:II:9047474:9053117:-1 gene:T24B8.7 11/11 A 
T24B8.7c ENSEMBL cdna:known chromosome:CEL140:II:9047474:9053117:-1 gene:T24B8.7 11/11 A 
T24B8.7a ENSEMBL cdna:known chromosome:CEL140:II:9047474:9053117:-1 gene:T24B8.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9047656-9047987(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24B8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92762 Hypothetical protein T24B8.7b [Caenorhabditis elegans] emb|CAA90960.2| Hypothetical protein T24B8.7b [Caenorhabditis elegans] ref|NP_495931.2| T24B8.7b [Caenorhabditis elegans] 0.0
blast CAA92761 Hypothetical protein T24B8.7a [Caenorhabditis elegans] emb|CAA90959.2| Hypothetical protein T24B8.7a [Caenorhabditis elegans] ref|NP_495932.2| T24B8.7a [Caenorhabditis elegans] 0.0
blast CAE59792 Hypothetical protein CBG03252 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 6.1E-9
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174692_S_AT
caagatgattcgtaacgagttccgaattcgtgaagaaatgagaaagacttgtgaaagaat
gctccaaagccgccagacaccacgttcaatagatcaacctatggactacgcgttgacaaa
acagcagattatgccaccaccatgtgttgataaccagaataacccagcatattcttcatc
cggttctgttgttcattcgtatatcaaaattataacatcattcatgcagcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGATGATTCGTAACGAGTTCCGA 282 183 13 Antisense
GTAACGAGTTCCGAATTCGTGAAGA 242 461 24 Antisense
CGCCAGACACCACGTTCAATAGATC 649 257 83 Antisense
TAGATCAACCTATGGACTACGCGTT 426 637 102 Antisense
GGACTACGCGTTGACAAAACAGCAG 351 523 115 Antisense
AACAGCAGATTATGCCACCACCATG 225 135 132 Antisense
GATTATGCCACCACCATGTGTTGAT 543 427 139 Antisense
GCCACCACCATGTGTTGATAACCAG 299 279 145 Antisense
AATAACCCAGCATATTCTTCATCCG 676 171 170 Antisense
CAGCATATTCTTCATCCGGTTCTGT 53 205 177 Antisense
ATTATAACATCATTCATGCAGCGAT 409 13 221 Antisense
Sequence Source Affymetrix Proprietary Database