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[174691_at]

Description CEK042F8R_rc /REP_DB=TREMBL Accession /GB=D34211 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk42f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 20      6grp_total > 16      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1493
1 2 3 4 range
A 1915.4
(3)
P 		1028.4
(-1.4)
P 		697.4
(-3)
P 		1757.2
(2.2)
P 		1218
B 1644.9
(3)
P 		982.6
(-1.4)
P 		739.7
(-3)
P 		1564.6
(2.5)
P 		905
C 2190.5
(3)
P 		872.7
(-2.5)
P 		748.5
(-3)
P 		1581.4
(0.5)
P 		1442
avr 1916.9
(3) 		961.2
(-1.8) 		728.5
(-3) 		1634.4
(1.6) 		1188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1330
1 2 3 4 5 6 range
A 1971.1
(3)
P 		1447.5
(0.6)
P 		1022.5
(-1.3)
P 		654.6
(-2.9)
P 		1238.2
(-0.3)
P 		640.8
(-3)
P 		1330
B 1869.7
(3)
P 		1293.6
(0)
P 		698.5
(-3)
P 		1091.8
(-1)
P 		938.5
(-1.8)
P 		1088.8
(-1)
P 		1171
C 1437
(1.2)
P 		1715.2
(3)
P 		817.2
(-2.9)
P 		822.5
(-2.8)
P 		918.2
(-2.2)
P 		797.8
(-3)
P 		917
avr 1759.3
(3) 		1485.4
(1.2) 		846.1
(-3) 		856.3
(-2.9) 		1031.6
(-1.8) 		842.5
(-3) 		917
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 554
1 2 3 4 range
A 697.4
(3)
P 		223.2
(-2.5)
P 		182.3
(-3)
P 		257.2
(-2.1)
P 		515
B 524.6
(3)
P 		242.7
(-1.8)
P 		171.4
(-3)
P 		333.4
(-0.2)
P 		353
C 725.1
(3)
P 		250.9
(-3)
P 		260.9
(-2.9)
P 		266.6
(-2.8)
P 		474
avr 649
(3) 		238.9
(-2.5) 		204.9
(-3) 		285.7
(-1.9) 		444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 363.4
(0.5)
P 		514.8
(3)
P 		222.7
(-1.9)
P 		166
(-2.8)
P 		373.6
(0.6)
P 		156
(-3)
P 		359
B 650.6
(3)
P 		430.6
(0.3)
P 		169.6
(-3)
P 		289.2
(-1.5)
P 		381.3
(-0.4)
P 		406
(-0.1)
P 		481
C 532.7
(3)
P 		523.4
(2.8)
P 		208
(-2.3)
P 		165.4
(-3)
P 		297.1
(-0.8)
P 		267.1
(-1.3)
P 		367
avr 515.6
(3) 		489.6
(2.5) 		200.1
(-3) 		206.9
(-2.9) 		350.7
(-0.1) 		276.4
(-1.5) 		316
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21876
Sequence Type Exemplar sequence
Representative Public ID CEK042F8R NCBI
Target Description CEK042F8R_rc /REP_DB=TREMBL Accession /GB=D34211 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk42f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F28C1.3a ENSEMBL cdna:known chromosome:CEL140:V:12471271:12476123:1 gene:F28C1.3 11/11 None
F28C1.3b ENSEMBL cdna:known chromosome:CEL140:V:12471460:12476122:1 gene:F28C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12475725-12476100(+) 100.0 100.0
Public Domain and Genome References
Ensembl F28C1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99943 Hypothetical protein F28C1.3a [Caenorhabditis elegans] emb|CAA99846.3| Hypothetical protein F28C1.3a [Caenorhabditis elegans] ref|NP_506126.2| F28C1.3a [Caenorhabditis elegans] 0.0
blast CAD54158 Hypothetical protein F28C1.3b [Caenorhabditis elegans] emb|CAD54134.1| Hypothetical protein F28C1.3b [Caenorhabditis elegans] ref|NP_872197.1| F28C1.3b [Caenorhabditis elegans] 0.0
blast CAE75495 Hypothetical protein CBG23501 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.31
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.054
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.91
Sequence
Target Sequence 
>C. ELEGANS:174691_AT
aggagcggctgttcatatttgtccccattttcctttagttttttcatttcacattttact
gccaatttgaattagagtaggttattgtaaagatgtatttctccccgtgaagtgctcagt
tatctttttttcactttcactttaagtttttccatttaacagaaacatgaacaagtaagc
atccattgtaaataccccgttttacctgaaattacctccagtttccactttcgtggacaa
attctttgcaaacaatcattttgattatcttaattcactttgcacccagttttactcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGCGGCTGTTCATATTTGTCCC 673 55 48 Antisense
TTCCTTTAGTTTTTTCATTTCACAT 230 699 77 Antisense
CATTTCACATTTTACTGCCAATTTG 567 215 92 Antisense
GTAAAGATGTATTTCTCCCCGTGAA 653 461 134 Antisense
TCCCCGTGAAGTGCTCAGTTATCTT 127 591 149 Antisense
CAGTTATCTTTTTTTCACTTTCACT 413 207 164 Antisense
GCATCCATTGTAAATACCCCGTTTT 157 301 226 Antisense
TGAAATTACCTCCAGTTTCCACTTT 15 573 254 Antisense
CCACTTTCGTGGACAAATTCTTTGC 611 273 272 Antisense
GATTATCTTAATTCACTTTGCACCC 18 431 310 Antisense
CACTTTGCACCCAGTTTTACTCAAA 336 177 323 Antisense
Sequence Source Affymetrix Proprietary Database