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[174689_s_at]

Description CEK011H2R_rc /REP_DB=TREMBL Accession /GB=D32367 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk11h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 34      4grp_high_8_8 > 50      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 496.4
(3)
P 		390.1
(0.6)
P 		472.2
(2.5)
P 		228.4
(-3)
P 		268
B 608.7
(3)
P 		372.8
(-2.1)
P 		364.6
(-2.3)
P 		333.8
(-3)
P 		275
C 477.8
(2.5)
P 		454.4
(2)
P 		498.3
(3)
P 		236.7
(-3)
P 		262
avr 527.6
(3) 		405.8
(0.2) 		445
(1.1) 		266.3
(-3) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 453.2
(0.1)
P 		333.5
(-1.7)
P 		247.2
(-3)
P 		410.3
(-0.6)
P 		551.8
(1.5)
P 		652.4
(3)
P 		405
B 463.5
(-0.9)
P 		471.9
(-0.8)
P 		295.9
(-3)
P 		416.6
(-1.5)
P 		515.8
(-0.2)
P 		766.4
(3)
P 		471
C 466.6
(-1.7)
P 		436.6
(-2.4)
P 		410.4
(-3)
P 		468.5
(-1.7)
P 		502.3
(-0.9)
P 		671
(3)
P 		261
avr 461.1
(-0.7) 		414
(-1.5) 		317.8
(-3) 		431.8
(-1.2) 		523.3
(0.3) 		696.6
(3) 		379
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 180.7
(3)
P 		84.7
(-0.9)
P 		123.5
(0.7)
P 		33.4
(-3)
P 		147
B 194.1
(3)
P 		92.1
(-2)
P 		84.5
(-2.3)
P 		71.1
(-3)
P 		123
C 158.2
(2.3)
P 		130.6
(1.1)
P 		173.7
(3)
P 		39.9
(-3)
P 		134
avr 177.7
(3) 		102.5
(-0.5) 		127.2
(0.7) 		48.1
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 83.5
(-1.4)
P 		118.6
(0.4)
P 		53.8
(-3)
P 		104.1
(-0.3)
P 		166.5
(3)
P 		158.8
(2.6)
P 		113
B 161.3
(-0.5)
P 		157.1
(-0.6)
P 		71.9
(-3)
P 		110.4
(-1.9)
P 		209.6
(0.9)
P 		285.8
(3)
P 		214
C 172.9
(0.6)
P 		133.2
(-1.2)
P 		104.5
(-2.5)
P 		94.2
(-3)
P 		162.5
(0.1)
P 		224.6
(3)
P 		130
avr 139.2
(-0.4) 		136.3
(-0.6) 		76.7
(-3) 		102.9
(-1.9) 		179.5
(1.2) 		223.1
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174689_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21470
Sequence Type Exemplar sequence
Representative Public ID CEK011H2R NCBI
Target Description CEK011H2R_rc /REP_DB=TREMBL Accession /GB=D32367 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk11h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070022 NCBI Caenorhabditis elegans T23B5.1 (T23B5.1) mRNA, complete cds. 11/11 A 
T23B5.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:12677377:12684349:-1 gene:T23B5.1 11/11 A 
T23B5.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12677377:12684351:-1 gene:T23B5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12677391-12677795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B5.1
Entrez Gene 178221 Entrez gene
SwissProt O02325 EMBL-EBI
WormBase CE18281 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07676 Hypothetical protein T23B5.1 [Caenorhabditis elegans] ref|NP_502423.1| T23B5.1 [Caenorhabditis elegans] 0.0
blast CAE59993 Hypothetical protein CBG03486 [Caenorhabditis briggsae] 0.0
blast CAB05233 Hypothetical protein JC8.11 [Caenorhabditis elegans] ref|NP_502540.1| JC8.11 [Caenorhabditis elegans] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:174689_S_AT
caatttcatcaacagtttctcacaaacaattcaacaatcgatatcaattaattctatttt
tttctaaattttcttacttatctaaatctcggaccccattatttcccttctttccaaaat
ttttctcattgcactgataattattaaggctgggttttcttaaaattttaaaatttaaac
tcaaattcactcccaaatattgtaggatctaactattccactattctgttaaattcccga
ttcctccaacttttcgttgccttttctatttattacttttttattttatttgttgatacc
tttgatttgaatcagctactacctgaatgattactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTCATCAACAGTTTCTCACAA 249 181 24 Antisense
TTTCTCACAAACAATTCAACAATCG 104 671 39 Antisense
TACTTATCTAAATCTCGGACCCCAT 250 643 98 Antisense
TCTAAATCTCGGACCCCATTATTTC 21 615 104 Antisense
AAATTTTTCTCATTGCACTGATAAT 69 115 140 Antisense
AAACTCAAATTCACTCCCAAATATT 629 125 200 Antisense
TGTAGGATCTAACTATTCCACTATT 505 557 224 Antisense
TATTCTGTTAAATTCCCGATTCCTC 290 663 245 Antisense
TTCGTTGCCTTTTCTATTTATTACT 592 695 276 Antisense
TATTTGTTGATACCTTTGATTTGAA 367 661 310 Antisense
AGCTACTACCTGAATGATTACTTTC 549 77 337 Antisense
Sequence Source Affymetrix Proprietary Database