[Home] | [Total List]

[174688_at] Transcription factor BTF3 (human)

Description CEK098F6R_rc /REP_DB=TREMBL Accession /GB=D72412 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 28      6grp_total > 35      4grp_total > 01      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14707
1 2 3 4 range
A 13765.7
(-0.9)
P 		10914.6
(-3)
P 		15532.1
(0.4)
P 		19050.5
(3)
P 		8136
B 16156.1
(0)
P 		12947
(-3)
P 		16979
(0.8)
P 		19309.8
(3)
P 		6363
C 12604.2
(-3)
P 		14744.5
(-2)
P 		13613.8
(-2.5)
P 		25622
(3)
P 		13018
avr 14175.3
(-2.1) 		12868.7
(-3) 		15375
(-1.2) 		21327.4
(3) 		8459

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6211
1 2 3 4 5 6 range
A 13798.3
(3)
P 		11920.9
(0.4)
P 		12465.7
(1.1)
P 		11053.3
(-0.8)
P 		11148.4
(-0.7)
P 		9486.3
(-3)
P 		4312
B 11975.8
(3)
P 		10513.8
(0.8)
P 		8027.9
(-3)
P 		9876.4
(-0.2)
P 		9862.4
(-0.2)
P 		10160.1
(0.2)
P 		3948
C 10199.2
(-0.6)
P 		13941.6
(3)
P 		11882.6
(1)
P 		7730.7
(-3)
P 		8865.1
(-1.9)
P 		13085.7
(2.2)
P 		6211
avr 11991.1
(2.7) 		12125.4
(3) 		10792.1
(-0.1) 		9553.5
(-3) 		9958.6
(-2.1) 		10910.7
(0.2) 		2572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2783
1 2 3 4 range
A 5012.1
(3)
P 		2369.3
(-3)
P 		4060.4
(0.8)
P 		2788.6
(-2)
P 		2643
B 5152.1
(3)
P 		3197.6
(-3)
P 		3934.4
(-0.7)
P 		4114.9
(-0.2)
P 		1955
C 4172.4
(-3)
P 		4239.1
(-2.3)
P 		4744.8
(3)
P 		4320.3
(-1.4)
P 		572
avr 4778.9
(3) 		3268.7
(-3) 		4246.5
(0.9) 		3741.3
(-1.1) 		1510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2826
1 2 3 4 5 6 range
A 2543.6
(-2.3)
P 		4239.7
(3)
P 		2714.8
(-1.7)
P 		2803.4
(-1.5)
P 		3364.1
(0.3)
P 		2309.6
(-3)
P 		1930
B 4167
(3)
P 		3499.6
(1.2)
P 		1949.4
(-3)
P 		2615.9
(-1.2)
P 		4007
(2.6)
P 		3788.7
(2)
P 		2218
C 3780.4
(1.7)
P 		4254
(2.7)
P 		3024.3
(0.1)
P 		1554.7
(-3)
P 		2868.6
(-0.2)
P 		4380.5
(3)
P 		2826
avr 3497
(1.2) 		3997.8
(3) 		2562.8
(-2.1) 		2324.7
(-3) 		3413.2
(0.9) 		3492.9
(1.2) 		1673
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20766
Sequence Type Exemplar sequence
Representative Public ID CEK098F6R NCBI
Target Description CEK098F6R_rc /REP_DB=TREMBL Accession /GB=D72412 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062935 NCBI Caenorhabditis elegans Inhibitor of Cell Death family member (icd-1) (icd-1) mRNA, complete cds. 11/11 None
C56C10.8.1 ENSEMBL cdna:known chromosome:CEL140:II:6587523:6588624:-1 gene:C56C10.8 11/11 A 
C56C10.8.2 ENSEMBL cdna:known chromosome:CEL140:II:6587523:6588600:-1 gene:C56C10.8 11/11 A 
C56C10.8.3 ENSEMBL cdna:known chromosome:CEL140:II:6587531:6588713:-1 gene:C56C10.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6587556-6588071(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transcription factor BTF3 (human)
Gene Symbol icd-1
Ensembl C56C10.8
Entrez Gene 174090 Entrez gene
SwissProt Q18885 EMBL-EBI
WormBase CE02573 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586179_AT similar to basic transcription factor 3-like 4 cfa
CANINE_2:CFAAFFX.6607.1.S1_S_AT similar to basic transcription factor 3-like 4 cfa
DROSOPHILA_2:1627623_S_AT bicaudal dm
DROSGENOME1:153308_AT bicaudal dm
CHICKEN:GGA.8548.2.S1_S_AT basic transcription factor 3-like 4 gga
CHICKEN:GGA.8548.3.S1_S_AT basic transcription factor 3-like 4 gga
HU35KSUBA:AA172215_S_AT basic transcription factor 3-like 4 hs
HU35KSUBC:RC_AA489000_AT basic transcription factor 3-like 4 hs
HG-U133_PLUS_2:226963_AT basic transcription factor 3-like 4 hs
HG-U133B:226963_AT basic transcription factor 3-like 4 hs
U133_X3P:HS.93748.1.S1_3P_X_AT basic transcription factor 3-like 4 hs
U133_X3P:HS.93748.1.S1_3P_AT basic transcription factor 3-like 4 hs
U133_X3P:HS.93748.1.S1_3P_A_AT basic transcription factor 3-like 4 hs
U133_X3P:HS.93748.0.A1_3P_AT basic transcription factor 3-like 4 hs
U133_X3P:226963_3P_AT basic transcription factor 3-like 4 hs
HG-U133_PLUS_2:225976_AT basic transcription factor 3-like 4 hs
HG-U133B:225976_AT basic transcription factor 3-like 4 hs
HG-U95B:49228_S_AT basic transcription factor 3-like 4 hs
HG-U95B:55649_AT basic transcription factor 3-like 4 hs
HG-U95C:59319_AT basic transcription factor 3-like 4 hs
HG-U133_PLUS_2:235819_AT Basic transcription factor 3-like 4 hs
HG-U133B:235819_AT Basic transcription factor 3-like 4 hs
HG-U133_PLUS_2:238675_X_AT Basic transcription factor 3-like 4 hs
HG-U133B:238675_X_AT Basic transcription factor 3-like 4 hs
HG-U133_PLUS_2:243972_AT Basic transcription factor 3-like 4 hs
HG-U133B:243972_AT Basic transcription factor 3-like 4 hs
HG-U95C:61897_AT Basic transcription factor 3-like 4 hs
HG-U95E:83350_AT Basic transcription factor 3-like 4 hs
HU35KSUBA:R08723_AT Basic transcription factor 3-like 4 hs
U133_X3P:238675_3P_X_AT Basic transcription factor 3-like 4 hs
U133_X3P:HS.125384.0.A1_3P_AT Basic transcription factor 3-like 4 hs
U133_X3P:HS.125384.1.S1_3P_AT Basic transcription factor 3-like 4 hs
U133_X3P:HS.125384.1.S1_3P_X_AT Basic transcription factor 3-like 4 hs
U133_X3P:HS.152708.0.A1_3P_AT Basic transcription factor 3-like 4 hs
MU11KSUBB:MSA.14340.0_S_AT basic transcription factor 3-like 4 mm
MG-U74AV2:96351_AT basic transcription factor 3-like 4 mm
MG-U74BV2:111994_AT basic transcription factor 3-like 4 mm
MOE430A:1451222_AT basic transcription factor 3-like 4 mm
MOUSE430A_2:1451222_AT basic transcription factor 3-like 4 mm
MOUSE430_2:1451222_AT basic transcription factor 3-like 4 mm
MOE430A:1451223_A_AT basic transcription factor 3-like 4 mm
MOUSE430A_2:1451223_A_AT basic transcription factor 3-like 4 mm
MOUSE430_2:1451223_A_AT basic transcription factor 3-like 4 mm
MOE430A:1424074_AT basic transcription factor 3-like 4 mm
MOUSE430A_2:1424074_AT basic transcription factor 3-like 4 mm
MOUSE430_2:1424074_AT basic transcription factor 3-like 4 mm
RG-U34A:RC_AA892835_AT similar to RIKEN cDNA 5730434I03 gene (predicted) rn
RAE230A:1373846_AT similar to RIKEN cDNA 5730434I03 gene (predicted) rn
RAT230_2:1373846_AT similar to RIKEN cDNA 5730434I03 gene (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA68776 Inhibitor of cell death protein 1 [Caenorhabditis elegans] ref|NP_495336.1| Inhibitor of Cell Death family member (icd-1) [Caenorhabditis elegans] sp|Q18885|BTF3_CAEEL Transcription factor BTF3 homolog (Inhibitor of cell death 1) 2.0E-86
blast CAE60667 Hypothetical protein CBG04320 [Caenorhabditis briggsae] 4.0E-86
blast AAH99245 Unknown (protein for MGC:116428) [Xenopus laevis] ref|NP_001011243.1| hypothetical protein LOC496686 [Xenopus tropicalis] gb|AAH87817.1| Hypothetical LOC496686 [Xenopus tropicalis] 2.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002715 EMBL-EBI Nascent polypeptide-associated complex NAC 1.4E-30
Sequence
Target Sequence 
>C. ELEGANS:174688_AT
gcaataaatcactaccctttcatcgaccaattcgcgagttttgtgagatgaacggtacgg
atagcatccgcattagtatatcccatttttcttgttactgttgatcgatttcaatgaatc
tctttaaaaaaatacttgctctgtcacctttttttccgcccccattagtgttcgttgtta
tacttgttttgtatacaaatttattcccgatcctcaaatggctaataaatgttagctatg
tatttaaagcaagctttctacgttccgatgattttgaattcttaggggttccggggatcc
ttctagtaatatctgttcctcggtgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATAAATCACTACCCTTTCATCG 360 323 113 Antisense
CCCTTTCATCGACCAATTCGCGAGT 571 259 127 Antisense
TAGCATCCGCATTAGTATATCCCAT 365 651 174 Antisense
TTAGTATATCCCATTTTTCTTGTTA 396 681 185 Antisense
AAAATACTTGCTCTGTCACCTTTTT 660 133 241 Antisense
GTGTTCGTTGTTATACTTGTTTTGT 161 483 280 Antisense
GTATACAAATTTATTCCCGATCCTC 497 453 303 Antisense
TATTCCCGATCCTCAAATGGCTAAT 668 663 314 Antisense
GCAAGCTTTCTACGTTCCGATGATT 368 321 361 Antisense
GTTCCGGGGATCCTTCTAGTAATAT 47 437 400 Antisense
TAGTAATATCTGTTCCTCGGTGTTT 530 651 416 Antisense
Sequence Source Affymetrix Proprietary Database