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[174687_at]

Description CEK084E2R_rc /REP_DB=TREMBL Accession /GB=D71959 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk84e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 85      6grp_total > 58      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 755.5
(3)
P 		398.3
(-3)
P 		487
(-1.5)
P 		444.5
(-2.2)
P 		357
B 892.1
(3)
P 		427.8
(-2.2)
P 		357.7
(-3)
P 		689.5
(0.7)
P 		534
C 805.8
(2.5)
P 		480.6
(-1.7)
P 		384.1
(-3)
P 		843.3
(3)
P 		459
avr 817.8
(3) 		435.6
(-2.6) 		409.6
(-3) 		659.1
(0.7) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 826
1 2 3 4 5 6 range
A 1027.5
(2.6)
P 		637.7
(-2.1)
P 		562.1
(-3)
P 		721.3
(-1.1)
P 		831.4
(0.2)
P 		1064.7
(3)
P 		503
B 839.1
(0.3)
P 		799
(-0)
P 		388.1
(-3)
P 		927
(0.9)
P 		759.6
(-0.3)
P 		1213.6
(3)
P 		826
C 756.3
(-0.7)
P 		788.7
(-0.3)
P 		701.9
(-1.3)
P 		777.2
(-0.5)
P 		547.6
(-3)
P 		1089.7
(3)
P 		542
avr 874.3
(0.4) 		741.8
(-1) 		550.7
(-3) 		808.5
(-0.3) 		712.9
(-1.3) 		1122.7
(3) 		572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 275.1
(3)
P 		86.5
(-2.4)
P 		127.3
(-1.2)
P 		65.1
(-3)
P 		210
B 284.5
(3)
P 		105.7
(-2.3)
P 		82.9
(-3)
P 		146.9
(-1.1)
P 		202
C 266.7
(3)
P 		138.2
(-2.8)
P 		133.9
(-3)
P 		142.2
(-2.6)
P 		133
avr 275.4
(3) 		110.1
(-3) 		114.7
(-2.8) 		118.1
(-2.7) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 189.4
(-0.1)
P 		226.8
(1.6)
P 		122.4
(-3)
P 		182.9
(-0.3)
P 		250.9
(2.6)
P 		259.2
(3)
P 		137
B 292
(0.3)
P 		266
(-0.1)
P 		94.2
(-3)
P 		245.5
(-0.5)
P 		308.6
(0.6)
P 		452.5
(3)
P 		358
C 280.3
(0.6)
P 		240.7
(-0.6)
P 		178.6
(-2.4)
P 		156.3
(-3)
P 		177.2
(-2.4)
P 		364.8
(3)
P 		209
avr 253.9
(0.2) 		244.5
(-0) 		131.7
(-3) 		194.9
(-1.3) 		245.6
(0) 		358.8
(3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21293
Sequence Type Exemplar sequence
Representative Public ID CEK084E2R NCBI
Target Description CEK084E2R_rc /REP_DB=TREMBL Accession /GB=D71959 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk84e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028044, NM_001028043
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F52B11.1a.3 ENSEMBL cdna:known chromosome:CEL140:IV:14077410:14083469:1 gene:F52B11.1 11/11 None
F52B11.1a.2 ENSEMBL cdna:known chromosome:CEL140:IV:14077411:14083480:1 gene:F52B11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028043 5/11 Cross Hyb Matching Probes None
NM_001028044 2/11 Cross Hyb Matching Probes None
SNAP00000035579 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035588 2/11 Cross Hyb Matching Probes None
F52B11.1b 2/11 Cross Hyb Matching Probes None
F52B11.1a.1 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14082913-14083465(+) 95.11 100.0
Public Domain and Genome References
Ensembl F52B11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05197 Hypothetical protein F52B11.1a [Caenorhabditis elegans] ref|NP_001023214.1| F52B11.1a [Caenorhabditis elegans] 0.0
blast CAD89737 Hypothetical protein F52B11.1b [Caenorhabditis elegans] ref|NP_001023215.1| F52B11.1b [Caenorhabditis elegans] 0.0
blast CAE71769 Hypothetical protein CBG18764 [Caenorhabditis briggsae] 1.0E-137
Sequence
Target Sequence 
>C. ELEGANS:174687_AT
ggaagataccgccgaatttctagcaaatctggctgtacagaaggaggaggagacgcagaa
taattaaaatttccctattttttttagttttttcctcaaaactatcatattctttcattt
ccgtggaatttcgtatcttttttccaaatctgaacaacatttttttctgtttgaataggt
gtcgtcctgaaatatggcggagagagagagagtgaagagacgcagacactctaacgacac
gttgcgtatattacacgaagcactggctttttcattcgttgttcttcaaaatttttatga
tttttatcttttgaacaaaaaacaaattgaacttacccttctttatattattattttatt
tattttcttctagttttccaaaaacctttttttgttctattttttgtttcacccaatttc
tctctatcggtgttcttcattttgatcctcaactattcactcatctctctttatacattt
tggtctctctctcgaagaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATACCGCCGAATTTCTAGCA 300 531 32 Antisense
GAATTTCTAGCAAATCTGGCTGTAC 591 325 45 Antisense
GACGCAGACACTCTAACGACACGTT 272 381 250 Antisense
GTATATTACACGAAGCACTGGCTTT 540 453 277 Antisense
TGGCTTTTTCATTCGTTGTTCTTCA 360 543 295 Antisense
TGAACTTACCCTTCTTTATATTATT 458 573 359 Antisense
ACCCAATTTCTCTCTATCGGTGTTC 465 89 442 Antisense
ATCGGTGTTCTTCATTTTGATCCTC 507 35 457 Antisense
TTTGATCCTCAACTATTCACTCATC 575 667 472 Antisense
TTCACTCATCTCTCTTTATACATTT 494 687 487 Antisense
TTTGGTCTCTCTCTCGAAGAAAATT 283 665 510 Antisense
Sequence Source Affymetrix Proprietary Database