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[174684_s_at] --- /// A. faecalis PHB depolymerase; zinc finger protein 40

Description CEK034B7R_rc /REP_DB=TREMBL Accession /GB=D33657 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 22      6grp_total > 25      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2591
1 2 3 4 range
A 2153.1
(1.4)
P 		2502.2
(2.3)
P 		2778.7
(3)
P 		453.2
(-3)
P 		2326
B 2482.3
(1.8)
P 		2659.5
(2.2)
P 		2991.7
(3)
P 		400.3
(-3)
P 		2591
C 2323.1
(2)
P 		2262.7
(1.9)
P 		2662.5
(3)
P 		556
(-3)
P 		2107
avr 2319.5
(1.7) 		2474.8
(2.1) 		2811
(3) 		469.8
(-3) 		2341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2033
1 2 3 4 5 6 range
A 2072.6
(0.8)
P 		2791.1
(3)
P 		1430.8
(-1.2)
P 		978.7
(-2.6)
P 		850.8
(-3)
P 		912.6
(-2.8)
P 		1940
B 1914.8
(1.8)
P 		2193.4
(3)
P 		1394.2
(-0.3)
P 		1093
(-1.6)
P 		758.2
(-3)
P 		799.1
(-2.8)
P 		1435
C 1532
(-0.5)
P 		2498
(3)
P 		1651.5
(-0)
P 		823.9
(-3)
P 		958.5
(-2.5)
P 		927.9
(-2.6)
P 		1674
avr 1839.8
(0.6) 		2494.2
(3) 		1492.2
(-0.7) 		965.2
(-2.6) 		855.8
(-3) 		879.9
(-2.9) 		1638
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 862
1 2 3 4 range
A 783.9
(3)
P 		543.2
(1)
P 		726.4
(2.5)
P 		66.3
(-3)
P 		718
B 791.6
(3)
P 		656.8
(1.9)
P 		693.2
(2.2)
P 		85.3
(-3)
P 		706
C 769
(1.9)
P 		650.5
(1)
P 		928
(3)
P 		93.8
(-3)
P 		834
avr 781.5
(3) 		616.8
(1.6) 		782.5
(3) 		81.8
(-3) 		701

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 382.1
(-1.8)
P 		992.6
(3)
P 		311.6
(-2.3)
P 		248.2
(-2.8)
P 		256.7
(-2.7)
P 		222.2
(-3)
P 		770
B 666.3
(2.1)
P 		730.1
(3)
P 		338.6
(-2.3)
P 		289.5
(-3)
P 		308
(-2.7)
P 		298
(-2.9)
P 		441
C 567.9
(1)
P 		762.2
(3)
P 		420.3
(-0.4)
P 		165.7
(-3)
P 		310.1
(-1.5)
P 		310.6
(-1.5)
P 		597
avr 538.8
(0.1) 		828.3
(3) 		356.8
(-1.8) 		234.5
(-3) 		291.6
(-2.4) 		276.9
(-2.6) 		594
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174684_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20662
Sequence Type Exemplar sequence
Representative Public ID CEK034B7R NCBI
Target Description CEK034B7R_rc /REP_DB=TREMBL Accession /GB=D33657 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062956(11), NM_062957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062956 NCBI Caenorhabditis elegans T19D12.1 (T19D12.1) mRNA, complete cds. 11/11 A 
NM_062957 NCBI Caenorhabditis elegans H43E16.1 (H43E16.1) mRNA, complete cds. 11/11 A 
SNAP00000041409 ENSEMBL cdna:SNAP chromosome:CEL140:II:6667018:6673294:1 11/11 None
GENEFINDER00000041412 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6667512:6673294:1 11/11 None
T19D12.1 ENSEMBL cdna:known chromosome:CEL140:II:6666863:6673690:1 gene:T19D12.1 11/11 A 
H43E16.1 ENSEMBL cdna:known chromosome:CEL140:II:6674211:6679306:1 gene:H43E16.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038934 8/11 Cross Hyb Matching Probes None
GENEFINDER00000038947 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6672898-6673675(+) 100.0 100.0
Public Domain and Genome References
Gene Title
A. faecalis PHB depolymerase; zinc finger protein 40
Ensembl T19D12.1
H43E16.1
Entrez Gene 174100 Entrez gene
174101 Entrez gene
SwissProt Q9N5K0 EMBL-EBI
Q22579 EMBL-EBI
WormBase CE19949 Wormbase
CE28677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24428 Hypothetical protein T19D12.1 [Caenorhabditis elegans] ref|NP_495357.1| T19D12.1 [Caenorhabditis elegans] 0.0
blast AAO38594 Hypothetical protein T19D12.2b [Caenorhabditis elegans] ref|NP_872039.1| T19D12.2b [Caenorhabditis elegans] 0.0
blast AAO38595 Hypothetical protein T19D12.2c [Caenorhabditis elegans] ref|NP_872040.1| T19D12.2c [Caenorhabditis elegans] 0.0
blast AAF39909 Hypothetical protein H43E16.1 [Caenorhabditis elegans] ref|NP_495358.1| H43E16.1 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495357.1 1 13-35
NP_495358.1 1 13-35
T19D12.1 1 13-35
H43E16.1 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:174684_S_AT
aaaccccgcaatgactacattcactcttcgagacctcagagcacaaggatataaagtgat
ttcggtagctgttggtgaaggtcatggagatttttccccaattcctgataaaccagaatg
gtatttccaagtaaacgactcaaatggacaaaatattgctgatcagatctcatctattct
ttgcaacttgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCCCGCAATGACTACATTCACT 669 125 120 Antisense
CAATGACTACATTCACTCTTCGAGA 270 183 128 Antisense
TACATTCACTCTTCGAGACCTCAGA 104 645 135 Antisense
TTCACTCTTCGAGACCTCAGAGCAC 366 687 139 Antisense
TCTTCGAGACCTCAGAGCACAAGGA 668 615 144 Antisense
GAGACCTCAGAGCACAAGGATATAA 164 395 149 Antisense
AAGTGATTTCGGTAGCTGTTGGTGA 153 159 173 Antisense
CGGTAGCTGTTGGTGAAGGTCATGG 548 241 182 Antisense
ATTGCTGATCAGATCTCATCTATTC 136 7 274 Antisense
GATCTCATCTATTCTTTGCAACTTG 448 419 285 Antisense
TCATCTATTCTTTGCAACTTGAAAT 258 621 289 Antisense
Sequence Source Affymetrix Proprietary Database