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[174683_at] A. faecalis PHB depolymerase; zinc finger protein 40

Description CEK034B7R_rc /REP_DB=TREMBL Accession /GB=D33657 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 50      6grp_total > 25      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 743
1 2 3 4 range
A 914
(3)
P 		706.4
(1)
P 		773.2
(1.7)
P 		284.9
(-3)
P 		629
B 931.2
(3)
P 		855.8
(2.4)
P 		797.5
(1.9)
P 		188.4
(-3)
P 		743
C 784.9
(1.9)
P 		762.9
(1.7)
P 		898
(3)
P 		289.2
(-3)
P 		609
avr 876.7
(3) 		775
(2) 		822.9
(2.5) 		254.2
(-3) 		623

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 541
1 2 3 4 5 6 range
A 675.1
(1.8)
P 		770.2
(3)
P 		417.3
(-1.4)
P 		314.6
(-2.6)
P 		370.2
(-1.9)
P 		283.7
(-3)
P 		487
B 663.6
(1.4)
P 		805.6
(3)
P 		444.4
(-1)
P 		470.3
(-0.7)
P 		264.4
(-3)
P 		321.9
(-2.4)
P 		541
C 622.7
(1.9)
P 		701.4
(3)
P 		492.1
(-0)
P 		357.6
(-2)
P 		284.7
(-3)
P 		333.7
(-2.3)
P 		417
avr 653.8
(1.6) 		759.1
(3) 		451.3
(-1.1) 		380.8
(-2) 		306.4
(-3) 		313.1
(-2.9) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 332.8
(3)
P 		153.3
(-0.7)
P 		202.1
(0.3)
P 		41.7
(-3)
P 		291
B 297
(3)
P 		211.4
(1)
P 		184.8
(0.4)
P 		40.2
(-3)
P 		257
C 259.8
(1.8)
P 		219.3
(0.9)
P 		313
(3)
P 		48.8
(-3)
P 		264
avr 296.5
(3) 		194.7
(0.6) 		233.3
(1.5) 		43.6
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 124.4
(-1.4)
P 		273.9
(3)
P 		90.9
(-2.4)
P 		79.8
(-2.7)
P 		111.7
(-1.8)
P 		69.1
(-3)
P 		205
B 230.9
(1.6)
P 		268.2
(3)
P 		107.9
(-3)
P 		124.6
(-2.4)
P 		107.4
(-3)
P 		120
(-2.5)
P 		161
C 230.8
(3)
P 		214
(2.4)
P 		125.2
(-1)
P 		71.9
(-3)
P 		92.1
(-2.2)
P 		111.7
(-1.5)
P 		159
avr 195.4
(0.9) 		252
(3) 		108
(-2.4) 		92.1
(-3) 		103.7
(-2.6) 		100.3
(-2.7) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20662
Sequence Type Exemplar sequence
Representative Public ID CEK034B7R NCBI
Target Description CEK034B7R_rc /REP_DB=TREMBL Accession /GB=D33657 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062956 NCBI Caenorhabditis elegans T19D12.1 (T19D12.1) mRNA, complete cds. 11/11 A 
T19D12.1 ENSEMBL cdna:known chromosome:CEL140:II:6666863:6673690:1 gene:T19D12.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062957 3/11 Cross Hyb Matching Probes None
SNAP00000041409 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041412 1/11 Cross Hyb Matching Probes None
H43E16.1 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6672898-6673675(+) 100.0 100.0
Public Domain and Genome References
Gene Title A. faecalis PHB depolymerase; zinc finger protein 40
Ensembl T19D12.1
Entrez Gene 174100 Entrez gene
SwissProt Q22579 EMBL-EBI
WormBase CE28677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24428 Hypothetical protein T19D12.1 [Caenorhabditis elegans] ref|NP_495357.1| T19D12.1 [Caenorhabditis elegans] 0.0
blast AAO38594 Hypothetical protein T19D12.2b [Caenorhabditis elegans] ref|NP_872039.1| T19D12.2b [Caenorhabditis elegans] 0.0
blast AAO38595 Hypothetical protein T19D12.2c [Caenorhabditis elegans] ref|NP_872040.1| T19D12.2c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495357.1 1 13-35
T19D12.1 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:174683_AT
ttccccaattcctgataaaccagaatggtatttccaagtaaacgactcaaatggacaaaa
tattgctgatcagatctcatctattctttgcaacttgaaataatcatctccccactgata
tctttccttactgtgcaagtttacccatttctttcagaaataaatactttacccatatcg
aagcgcttgcttcgtttatatgtgtcactaaacgtttctctgaacttgcaaaatttgctg
gaaattaacttttattgtgtcgacttttatatacaacaccaaaaaaaaacataaataatt
ttatgctcggatgtttttaggaattgtctgcttacaaattcattatttgttctttttaac
aaatttttattgaacaagattatattttttgaaataatttctacagcgacgatattccat
tggtgtcttctttctgtctcttctgttttaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCCAATTCCTGATAAACCAGAA 109 697 213 Antisense
GAAATAATCATCTCCCCACTGATAT 373 363 309 Antisense
CCCACTGATATCTTTCCTTACTGTG 251 259 323 Antisense
TCCTTACTGTGCAAGTTTACCCATT 35 591 337 Antisense
TTTACCCATATCGAAGCGCTTGCTT 676 673 380 Antisense
GCGCTTGCTTCGTTTATATGTGTCA 40 289 395 Antisense
GTGTCACTAAACGTTTCTCTGAACT 443 485 414 Antisense
TAACTTTTATTGTGTCGACTTTTAT 623 631 458 Antisense
AATTTCTACAGCGACGATATTCCAT 290 175 608 Antisense
TATTCCATTGGTGTCTTCTTTCTGT 328 665 625 Antisense
CTTTCTGTCTCTTCTGTTTTAATTT 396 223 642 Antisense
Sequence Source Affymetrix Proprietary Database