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[174680_at]

Description CEK076F1R_rc /REP_DB=TREMBL Accession /GB=D64610 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 17      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 183.8
(3)
P 		28.6
(-3)
A 		72.1
(-1.3)
P 		110.7
(0.2)
P 		155
B 160.6
(2.6)
P 		51.9
(-2.2)
P 		34
(-3)
P 		169.4
(3)
P 		135
C 163.1
(3)
P 		84.1
(-1.8)
P 		65
(-3)
P 		96.7
(-1.1)
P 		98
avr 169.2
(3) 		54.9
(-3) 		57
(-2.9) 		125.6
(0.7) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 121.3
(3)
P 		88.5
(-0.3)
P 		111.9
(2)
P 		71.2
(-2.1)
P 		73.7
(-1.8)
P 		62
(-3)
P 		59
B 131.2
(3)
P 		131.4
(3)
P 		98.4
(-0.8)
P 		79
(-3)
P 		79.8
(-2.9)
P 		113.9
(1)
P 		52
C 160.6
(3)
P 		92.6
(-1.3)
P 		65.7
(-3)
P 		70.2
(-2.7)
P 		84.3
(-1.8)
P 		101.3
(-0.7)
P 		95
avr 137.7
(3) 		104.2
(-0.1) 		92
(-1.3) 		73.5
(-3) 		79.3
(-2.5) 		92.4
(-1.2) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 66.9
(3)
P 		6.2
(-3)
A 		18.8
(-1.8)
P 		16.2
(-2)
P 		61
B 51.2
(3)
P 		12.8
(-2.3)
P 		7.9
(-3)
P 		36.1
(0.9)
P 		43
C 54
(3)
P 		24.2
(-1.7)
P 		22.7
(-2)
P 		16.3
(-3)
P 		38
avr 57.4
(3) 		14.4
(-3) 		16.5
(-2.7) 		22.9
(-1.8) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 22.4
(-0.3)
P 		31.5
(3)
P 		24.4
(0.4)
P 		18.1
(-1.9)
P 		22.2
(-0.4)
P 		15.1
(-3)
P 		16
B 45.7
(3)
P 		43.7
(2.5)
P 		23.9
(-2.3)
P 		20.9
(-3)
P 		32.4
(-0.2)
P 		42.5
(2.2)
P 		25
C 59.5
(3)
P 		28.3
(-1.1)
P 		16.7
(-2.7)
P 		14.1
(-3)
P 		27.3
(-1.3)
P 		33.9
(-0.4)
P 		45
avr 42.5
(3) 		34.5
(1.1) 		21.7
(-2) 		17.7
(-3) 		27.3
(-0.7) 		30.5
(0.1) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21858
Sequence Type Exemplar sequence
Representative Public ID CEK076F1R NCBI
Target Description CEK076F1R_rc /REP_DB=TREMBL Accession /GB=D64610 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073581
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036679 ENSEMBL cdna:SNAP chromosome:CEL140:V:11833866:11835169:-1 9/11 None
R13H4.1 ENSEMBL cdna:known chromosome:CEL140:V:11833802:11846213:-1 gene:R13H4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073581 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11833811-11834123(-) 100.0 100.0
Public Domain and Genome References
Ensembl R13H4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04654 Hypothetical protein R13H4.1 [Caenorhabditis elegans] ref|NP_505982.2| NePHronophthisis (human kidney disease) homolog family member (nph-4) [Caenorhabditis elegans] gb|AAX56914.1| nephrocystin-4-like protein [Caenorhabditis elegans] 0.0
blast CAE75282 Hypothetical protein CBG23249 [Caenorhabditis briggsae] 0.0
blast CAB04654 Hypothetical protein R13H4.1 [Caenorhabditis elegans] ref|NP_505982.2| NePHronophthisis (human kidney disease) homolog family member (nph-4) [Caenorhabditis elegans] gb|AAX56914.1| nephrocystin-4-like protein [Caenorhabditis elegans] 3.0E-68
blast CAH72673 nephronophthisis 4 [Homo sapiens] emb|CAI14749.1| nephronophthisis 4 [Homo sapiens] emb|CAI19892.1| nephronophthisis 4 [Homo sapiens] 2.0E-56
blast CAE75286 Hypothetical protein CBG23254 [Caenorhabditis briggsae] 3.0E-44
blast CAE57098 Hypothetical protein CBG24998 [Caenorhabditis briggsae] 6.0E-33
Sequence
Target Sequence 
>C. ELEGANS:174680_AT
acattccgaatcaccacatcaaattctgatattgtaaaaattacggatagtctgttgtca
gttccacctatgggaaaacttccatgtgaaatgtattttgtgaagaatacacatcttcag
acattgttgtatatatcagatgcggagacttatgtacaagaagaagcatattcaatcaca
cttgcattcgaagcttcctgattttcaaattgtctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTCCGAATCACCACATCAAATT 310 105 15 Antisense
GGATAGTCTGTTGTCAGTTCCACCT 271 509 59 Antisense
TCTGTTGTCAGTTCCACCTATGGGA 140 609 65 Antisense
CCACCTATGGGAAAACTTCCATGTG 196 273 78 Antisense
GAATACACATCTTCAGACATTGTTG 315 327 119 Antisense
GACATTGTTGTATATATCAGATGCG 99 371 134 Antisense
ATCAGATGCGGAGACTTATGTACAA 284 29 149 Antisense
GAAGAAGCATATTCAATCACACTTG 569 339 174 Antisense
ATCACACTTGCATTCGAAGCTTCCT 406 27 189 Antisense
TGCATTCGAAGCTTCCTGATTTTCA 127 579 197 Antisense
GCTTCCTGATTTTCAAATTGTCTCA 180 307 207 Antisense
Sequence Source Affymetrix Proprietary Database