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[174679_at]

Description CEK082C1R_rc /REP_DB=TREMBL Accession /GB=D71822 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 81      6grp_total > 03      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 490.4
(3)
P 		324
(-2.7)
P 		316
(-3)
P 		410
(0.2)
P 		174
B 383.3
(2.8)
P 		332.4
(0.4)
P 		260.3
(-3)
P 		388.2
(3)
P 		128
C 313.4
(-0.8)
P 		365.7
(0.5)
P 		230.7
(-3)
P 		459.1
(3)
P 		228
avr 395.7
(2.1) 		340.7
(-0.1) 		269
(-3) 		419.1
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 262.6
(1.3)
P 		233.1
(0.3)
P 		137.3
(-3)
P 		313.1
(3)
P 		213.3
(-0.4)
P 		260.2
(1.2)
P 		176
B 256.2
(0.2)
P 		349.1
(3)
P 		147.3
(-3)
P 		273.4
(0.7)
P 		259.1
(0.3)
P 		175
(-2.2)
P 		202
C 409.8
(3)
P 		297.9
(-0.5)
P 		291.3
(-0.7)
P 		217
(-3)
P 		318.9
(0.2)
P 		223.2
(-2.8)
P 		193
avr 309.5
(3) 		293.4
(2.2) 		192
(-3) 		267.8
(0.9) 		263.8
(0.7) 		219.5
(-1.6) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 178.5
(3)
P 		70.3
(-2.5)
P 		82.6
(-1.9)
P 		60
(-3)
P 		119
B 122.2
(3)
P 		82.1
(-0.9)
P 		60.3
(-3)
P 		82.7
(-0.8)
P 		62
C 103.7
(2.7)
P 		105.1
(3)
P 		80.4
(-2.4)
P 		77.4
(-3)
P 		28
avr 134.8
(3) 		85.8
(-1.8) 		74.4
(-2.9) 		73.4
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 48.4
(-0.9)
P 		82.9
(3)
P 		29.9
(-3)
P 		79.4
(2.6)
P 		64.4
(0.9)
P 		63.4
(0.8)
P 		53
B 89.1
(1)
P 		116.2
(3)
P 		35.8
(-3)
P 		72.4
(-0.3)
P 		105.3
(2.2)
P 		65.2
(-0.8)
P 		80
C 151.9
(3)
P 		90.9
(-0.4)
P 		74.1
(-1.3)
P 		43.6
(-3)
P 		103.2
(0.3)
P 		74.7
(-1.3)
P 		108
avr 96.5
(3) 		96.7
(3) 		46.6
(-3) 		65.1
(-0.8) 		91
(2.3) 		67.8
(-0.5) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22115
Sequence Type Exemplar sequence
Representative Public ID CEK082C1R NCBI
Target Description CEK082C1R_rc /REP_DB=TREMBL Accession /GB=D71822 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R04E5.9 ENSEMBL cdna:known chromosome:CEL140:X:8806063:8810972:-1 gene:R04E5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036376 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8806071-8806406(-) 100.0 100.0
Public Domain and Genome References
Ensembl R04E5.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00011 Hypothetical protein R04E5.9 [Caenorhabditis elegans] ref|NP_509492.1| R04E5.9 [Caenorhabditis elegans] 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:174679_AT
agatgagaagggctcgtcgtcgctgcacgcggcgtgactcggtcagaactctcgttcttc
tcccttttcacggatcaatggccacgatgcgtgcgctcacagtgggtatctcatggcaac
gcattgctttgctccgccttttttatcgacagcaaaatttgtctttctctcccgtcaact
cttctcatctcttactgatacctacgtgtatacttcattgttccaaatactgaatgtatt
tcttgctcaattttcgagtgtaccatttatactccttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGAGAAGGGCTCGTCGTCGCTG 328 65 28 Antisense
TGACTCGGTCAGAACTCTCGTTCTT 341 569 62 Antisense
CTTCTCCCTTTTCACGGATCAATGG 20 219 84 Antisense
ATCAATGGCCACGATGCGTGCGCTC 323 27 101 Antisense
CGCTCACAGTGGGTATCTCATGGCA 536 255 121 Antisense
CATGGCAACGCATTGCTTTGCTCCG 487 209 139 Antisense
TCCGCCTTTTTTATCGACAGCAAAA 694 593 160 Antisense
ACAGCAAAATTTGTCTTTCTCTCCC 231 109 176 Antisense
TCTTCTCATCTCTTACTGATACCTA 483 617 207 Antisense
ACCTACGTGTATACTTCATTGTTCC 543 87 227 Antisense
GAGTGTACCATTTATACTCCTTTTT 203 401 283 Antisense
Sequence Source Affymetrix Proprietary Database