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[174677_s_at]

Description CEK033G2R_rc /REP_DB=TREMBL Accession /GB=D33624 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 12      6grp_total > 16      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1617
1 2 3 4 range
A 2612.8
(3)
P 		1966.7
(0.6)
P 		1524.4
(-1)
P 		995.9
(-3)
P 		1617
B 2355
(3)
P 		1890.9
(0)
P 		1422.2
(-2.9)
P 		1412.6
(-3)
P 		942
C 2607.1
(3)
P 		1623.6
(-1.1)
P 		1595.7
(-1.2)
P 		1163.3
(-3)
P 		1444
avr 2525
(3) 		1827.1
(-0.1) 		1514.1
(-1.5) 		1190.6
(-3) 		1334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2061
1 2 3 4 5 6 range
A 3109.7
(3)
P 		2366
(0.6)
P 		1636.7
(-1.7)
P 		1239.8
(-3)
P 		1875.6
(-1)
P 		1295.7
(-2.8)
P 		1870
B 3227.7
(3)
P 		2634.8
(1.1)
P 		1642.6
(-2.1)
P 		1655.9
(-2.1)
P 		1372.8
(-3)
P 		1537.7
(-2.5)
P 		1855
C 2834.2
(3)
P 		2573.1
(2.1)
P 		1715.6
(-1)
P 		1528.2
(-1.7)
P 		1578.9
(-1.5)
P 		1166.6
(-3)
P 		1668
avr 3057.2
(3) 		2524.6
(1.1) 		1665
(-1.8) 		1474.6
(-2.5) 		1609.1
(-2) 		1333.3
(-3) 		1724
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 806
1 2 3 4 range
A 951.3
(3)
P 		426.9
(-0.9)
P 		398.5
(-1.1)
P 		145.8
(-3)
P 		806
B 751
(3)
P 		467
(-0.8)
P 		329.5
(-2.6)
P 		301
(-3)
P 		450
C 863
(3)
P 		466.8
(-0.6)
P 		556.1
(0.2)
P 		196.2
(-3)
P 		667
avr 855.1
(3) 		453.6
(-0.8) 		428
(-1) 		214.3
(-3) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 573.3
(-0.1)
P 		841.5
(3)
P 		356.4
(-2.5)
P 		314.4
(-3)
P 		566
(-0.1)
P 		315.5
(-3)
P 		527
B 1123.1
(3)
P 		877
(1)
P 		398.9
(-3)
P 		438.6
(-2.7)
P 		557.7
(-1.7)
P 		573.4
(-1.6)
P 		724
C 1050.5
(3)
P 		785.1
(0.9)
P 		436.6
(-2)
P 		307.3
(-3)
P 		510.9
(-1.4)
P 		390.5
(-2.3)
P 		743
avr 915.6
(3) 		834.5
(2.1) 		397.3
(-2.5) 		353.4
(-3) 		544.9
(-1) 		426.5
(-2.2) 		562
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174677_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22222
Sequence Type Exemplar sequence
Representative Public ID CEK033G2R NCBI
Target Description CEK033G2R_rc /REP_DB=TREMBL Accession /GB=D33624 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077180 NCBI Caenorhabditis elegans C23F12.1b (C23F12.1) mRNA, complete cds. 11/11 None
C23F12.1b ENSEMBL cdna:known chromosome:CEL140:X:9412606:9427184:1 gene:C23F12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181168 2 1 NM_077180 174677_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9426683-9427153(+) 100.0 100.0
Public Domain and Genome References
Ensembl C23F12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN60532 Hypothetical protein C23F12.1b [Caenorhabditis elegans] ref|NP_509581.2| C23F12.1b [Caenorhabditis elegans] 0.0
blast CAE69823 Hypothetical protein CBG16142 [Caenorhabditis briggsae] 0.0
blast AAN60531 Hypothetical protein C23F12.1a [Caenorhabditis elegans] ref|NP_509580.2| C23F12.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.Helicase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Helicase DNA-binding domain 1.70000004768372
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 9.1E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.6E-13
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Sequence
Target Sequence 
>C. ELEGANS:174677_S_AT
gattatacaatccccaaatacaatgtgatactttctctgatgatgacacaacaaacgttc
ttttattttcatcatttctaatcataatgctcatttttcccagacgtttacttacatttt
aaaacagaaatactcctgccaaatgtttcttacctttgctccatgttcccacttccttca
cttttaaatgctcattaataaaatgaacaagatcctgtgctctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATACAATCCCCAAATACAATG 304 429 148 Antisense
AATACAATGTGATACTTTCTCTGAT 561 171 164 Antisense
GATACTTTCTCTGATGATGACACAA 576 423 174 Antisense
ACTTTCTCTGATGATGACACAACAA 103 103 177 Antisense
ACAGAAATACTCCTGCCAAATGTTT 157 109 271 Antisense
ATACTCCTGCCAAATGTTTCTTACC 71 25 277 Antisense
GCCAAATGTTTCTTACCTTTGCTCC 123 279 285 Antisense
CAAATGTTTCTTACCTTTGCTCCAT 436 193 287 Antisense
TCCCACTTCCTTCACTTTTAAATGC 175 597 314 Antisense
TTCCTTCACTTTTAAATGCTCATTA 530 699 320 Antisense
AATGAACAAGATCCTGTGCTCTGCT 326 165 349 Antisense
Sequence Source Affymetrix Proprietary Database