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[174676_at]

Description CEK083F4R_rc /REP_DB=TREMBL Accession /GB=D71908 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk83f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 57      6grp_total > 26      4grp_total > 08      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5223
1 2 3 4 range
A 3395.5
(-1.9)
P 		2690.6
(-3)
P 		4063.5
(-0.8)
P 		6431.5
(3)
P 		3741
B 3199.6
(-3)
P 		3458.4
(-2.7)
P 		4559.4
(-1.2)
P 		7750
(3)
P 		4550
C 3189
(-3)
P 		3629.4
(-2.4)
P 		4073.2
(-1.9)
P 		7913.8
(3)
P 		4725
avr 3261.4
(-3) 		3259.5
(-3) 		4232
(-1.6) 		7365.1
(3) 		4106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1569
1 2 3 4 5 6 range
A 3366.7
(3)
P 		2722.6
(0.5)
P 		2357.5
(-0.9)
P 		1798.2
(-3)
P 		2424.5
(-0.6)
P 		2521.1
(-0.2)
P 		1569
B 3321
(3)
P 		3295.5
(2.8)
P 		2581.1
(-1.7)
P 		2385.4
(-3)
P 		2493.4
(-2.3)
P 		2934.5
(0.5)
P 		936
C 2963.2
(2.5)
P 		3057.1
(3)
P 		2226.8
(-1.9)
P 		2032
(-3)
P 		2126.6
(-2.4)
P 		2579.4
(0.2)
P 		1025
avr 3217
(3) 		3025.1
(2) 		2388.5
(-1.3) 		2071.9
(-3) 		2348.2
(-1.6) 		2678.3
(0.2) 		1145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1068
1 2 3 4 range
A 1236.3
(3)
P 		584
(-3)
P 		1062.3
(1.4)
P 		941.4
(0.3)
P 		652
B 1020.3
(-1.7)
P 		854.1
(-3)
P 		1056.5
(-1.5)
P 		1651.5
(3)
P 		797
C 1055.6
(-2.8)
P 		1043.5
(-3)
P 		1419.6
(3)
P 		1334.4
(1.6)
P 		376
avr 1104.1
(0.4) 		827.2
(-3) 		1179.5
(1.4) 		1309.1
(3) 		482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 747
1 2 3 4 5 6 range
A 620.6
(-1.1)
P 		968.3
(3)
P 		513.4
(-2.3)
P 		456.1
(-3)
P 		731.6
(0.2)
P 		613.8
(-1.2)
P 		512
B 1155.5
(3)
P 		1096.9
(2.3)
P 		626.8
(-3)
P 		631.8
(-2.9)
P 		1013
(1.4)
P 		1094.3
(2.3)
P 		529
C 1098.3
(3)
P 		932.8
(1.6)
P 		566.8
(-1.6)
P 		408.6
(-3)
P 		688.1
(-0.6)
P 		863.5
(1)
P 		690
avr 958.1
(2.5) 		999.3
(3) 		569
(-2.2) 		498.8
(-3) 		810.9
(0.7) 		857.2
(1.3) 		501
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20878
Sequence Type Exemplar sequence
Representative Public ID CEK083F4R NCBI
Target Description CEK083F4R_rc /REP_DB=TREMBL Accession /GB=D71908 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk83f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065514 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-5) (cct-5) mRNA, complete cds. 11/11 A 
C07G2.3b.5 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4508079:-1 gene:C07G2.3 11/11 A 
C07G2.3b.2 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4508079:-1 gene:C07G2.3 11/11 A 
C07G2.3b.1 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4501475:-1 gene:C07G2.3 11/11 A 
C07G2.3b.6 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4501477:-1 gene:C07G2.3 11/11 A 
C07G2.3b.4 ENSEMBL cdna:known chromosome:CEL140:III:4499157:4507836:-1 gene:C07G2.3 11/11 A 
C07G2.3b.3 ENSEMBL cdna:known chromosome:CEL140:III:4499239:4508079:-1 gene:C07G2.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175588 2 1 NM_065514 174676_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4499177-4499658(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07G2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD01079 Hypothetical protein C07G2.3b [Caenorhabditis elegans] ref|NP_497915.3| Chaperonin Containing TCP-1 family member (cct-5) [Caenorhabditis elegans] 0.0
blast CAA84660 Hypothetical protein C07G2.3a [Caenorhabditis elegans] emb|CAA83681.1| Hypothetical protein C07G2.3a [Caenorhabditis elegans] ref|NP_741117.1| Chaperonin Containing TCP-1 family member (cct-5) [Caenorhabditis elegans] sp|P47209|TCPE_CAEEL T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) gb|AAA92843.1| CCT-5 0.0
blast CAE71194 Hypothetical protein CBG18052 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 4.0E-104
Sequence
Target Sequence 
>C. ELEGANS:174676_AT
tgggatattaagaaaaccatcagacacgaaggttacgatagataaccatctctcaaagtc
tatcgacctcctttttcatcttgttttccttccgatttacaatttttgtttctttctatc
gaaatctcttccccactgtttctccacccatttgctattaccttttcttaattttcaatt
tttaaaaattgtttaattgcttgctctcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGATATTAAGAAAACCATCAGAC 66 553 78 Antisense
ACCATCAGACACGAAGGTTACGATA 132 87 93 Antisense
GTTACGATAGATAACCATCTCTCAA 441 445 109 Antisense
AACCATCTCTCAAAGTCTATCGACC 521 147 121 Antisense
TCTCTCAAAGTCTATCGACCTCCTT 696 609 126 Antisense
TCTTGTTTTCCTTCCGATTTACAAT 257 617 156 Antisense
TACAATTTTTGTTTCTTTCTATCGA 698 641 175 Antisense
TTCTTTCTATCGAAATCTCTTCCCC 674 689 187 Antisense
CCATTTGCTATTACCTTTTCTTAAT 595 269 225 Antisense
AAATTGTTTAATTGCTTGCTCTCCC 501 115 263 Antisense
ATTGTTTAATTGCTTGCTCTCCCAG 492 5 265 Antisense
Sequence Source Affymetrix Proprietary Database