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[174674_at]

Description CEK046C8R_rc /REP_DB=TREMBL Accession /GB=D34465 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 13      6grp_total > 36      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2086
1 2 3 4 range
A 3993.9
(3)
P 		3762.3
(1.6)
P 		2970.9
(-3)
P 		3673.9
(1.1)
P 		1023
B 4026.6
(1.4)
P 		2511.9
(-3)
P 		2726.8
(-2.4)
P 		4598.2
(3)
P 		2086
C 3302.6
(-0.3)
P 		2648.2
(-3)
P 		2864.7
(-2.1)
P 		4118
(3)
P 		1470
avr 3774.4
(1.3) 		2974.1
(-2.4) 		2854.1
(-3) 		4130
(3) 		1276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2152
1 2 3 4 5 6 range
A 3911.7
(3)
P 		3268.8
(1.1)
P 		2305.5
(-1.9)
P 		1932
(-3)
P 		2250.6
(-2)
P 		2715
(-0.6)
P 		1980
B 3128.2
(2.8)
P 		3168.5
(3)
P 		2900.5
(1.7)
P 		2093.1
(-2.3)
P 		1950.3
(-3)
P 		3164.2
(3)
P 		1218
C 2766.1
(1.8)
P 		3009.6
(3)
P 		2921
(2.6)
P 		1760.2
(-3)
P 		2255.5
(-0.6)
P 		2497.4
(0.5)
P 		1249
avr 3268.7
(3) 		3149
(2.5) 		2709
(0.5) 		1928.4
(-3) 		2152.1
(-2) 		2792.2
(0.9) 		1340
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 916
1 2 3 4 range
A 1454.2
(3)
P 		816.7
(-1.2)
P 		776.7
(-1.4)
P 		537.8
(-3)
P 		916
B 1284.1
(3)
P 		620.4
(-3)
P 		631.9
(-2.9)
P 		979.9
(0.2)
P 		664
C 1093.3
(3)
P 		761.4
(-2)
P 		998.5
(1.6)
P 		694.4
(-3)
P 		399
avr 1277.2
(3) 		732.8
(-3) 		802.4
(-2.2) 		737.4
(-2.9) 		544

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 826
1 2 3 4 5 6 range
A 721.1
(-0.9)
P 		1162.5
(3)
P 		502.1
(-2.9)
P 		490
(-3)
P 		679.1
(-1.3)
P 		661
(-1.5)
P 		673
B 1088.5
(2.1)
P 		1054.7
(1.8)
P 		704.3
(-1.6)
P 		554.4
(-3)
P 		792.4
(-0.7)
P 		1179.9
(3)
P 		626
C 1025.3
(3)
P 		918.3
(2)
P 		743.4
(0.5)
P 		354
(-3)
P 		729.8
(0.4)
P 		836
(1.3)
P 		671
avr 945
(2) 		1045.2
(3) 		649.9
(-1.1) 		466.1
(-3) 		733.8
(-0.2) 		892.3
(1.4) 		579
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22090
Sequence Type Exemplar sequence
Representative Public ID CEK046C8R NCBI
Target Description CEK046C8R_rc /REP_DB=TREMBL Accession /GB=D34465 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029524 NCBI Caenorhabditis elegans F49E2.5j (F49E2.5) mRNA, complete cds. 11/11 None
F49E2.5d.1 ENSEMBL cdna:known chromosome:CEL140:X:9543602:9560729:1 gene:F49E2.5 11/11 A 
F49E2.5d.2 ENSEMBL cdna:known chromosome:CEL140:X:9552773:9560729:1 gene:F49E2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181175 10 1 NM_001029522 180309_s_at (10)
NM_001029523 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_001029524 171758_x_at (9), 172298_x_at (10), 174674_at (11), 180098_s_at (11), 180309_s_at (10)
NM_077204 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_077205 180309_s_at (10)
NM_077206 180309_s_at (10)
NM_077207 180309_s_at (10)
NM_077208 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
NM_077209 171758_x_at (10), 172298_x_at (11), 180098_s_at (11)
NM_171968 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9560380-9560719(+) 100.0 100.0
Public Domain and Genome References
Ensembl F49E2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79255 Hypothetical protein F49E2.5j [Caenorhabditis elegans] ref|NP_001024695.1| F49E2.5j [Caenorhabditis elegans] 0.0
blast CAA86429 Hypothetical protein F49E2.5b [Caenorhabditis elegans] ref|NP_509607.2| F49E2.5b [Caenorhabditis elegans] 0.0
blast CAH04746 Hypothetical protein F49E2.5h [Caenorhabditis elegans] ref|NP_001024693.1| F49E2.5h [Caenorhabditis elegans] 0.0
blast CAA86427 Hypothetical protein F49E2.5d [Caenorhabditis elegans] ref|NP_509606.2| F49E2.5d [Caenorhabditis elegans] 0.0
blast CAI79254 Hypothetical protein F49E2.5i [Caenorhabditis elegans] ref|NP_001024694.1| F49E2.5i [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 3.4E-10
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 7.4E-56
Sequence
Target Sequence 
>C. ELEGANS:174674_AT
tttctctttttgatactttgtaccattgcattagttacatttgtgtgtttcatattttaa
gttcagtgaccggtttgttatatcctcttcttttctgcatcttgctcccatctctgtcac
ccctctctctatcccgctctacattttgtggcgactgacttttttttttggctggtagtt
gtctagaattgagttcgttgagcctatccaagttaatctgactcattttcattgctaacc
tgttgagtcgcgtgcattcgtgtattcgttttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTCTTTTTGATACTTTGTACCA 369 671 32 Antisense
CATATTTTAAGTTCAGTGACCGGTT 136 187 82 Antisense
GTGACCGGTTTGTTATATCCTCTTC 161 481 97 Antisense
CTATCCCGCTCTACATTTTGTGGCG 84 225 160 Antisense
CCCGCTCTACATTTTGTGGCGACTG 227 261 164 Antisense
TTTTTTTGGCTGGTAGTTGTCTAGA 337 673 194 Antisense
GGCTGGTAGTTGTCTAGAATTGAGT 35 539 201 Antisense
CATTTTCATTGCTAACCTGTTGAGT 316 215 255 Antisense
TAACCTGTTGAGTCGCGTGCATTCG 356 637 267 Antisense
AGTCGCGTGCATTCGTGTATTCGTT 321 61 277 Antisense
GTGCATTCGTGTATTCGTTTTTTGA 268 481 283 Antisense
Sequence Source Affymetrix Proprietary Database