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[174673_s_at]

Description CEK098A1R_rc /REP_DB=TREMBL Accession /GB=D72372 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 927
1 2 3 4 range
A 327.2
(-2.6)
P 		271.5
(-3)
P 		370.7
(-2.2)
P 		1059.4
(3)
P 		788
B 347.1
(-2.2)
P 		231.4
(-3)
P 		302.2
(-2.5)
P 		1113.7
(3)
P 		882
C 334.6
(-1.7)
P 		186.4
(-3)
P 		337.2
(-1.7)
P 		880.3
(3)
P 		694
avr 336.3
(-2.2) 		229.8
(-3) 		336.7
(-2.2) 		1017.8
(3) 		788

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 307.5
(-0.9)
P 		237.1
(-3)
P 		254
(-2.5)
P 		265.1
(-2.1)
P 		261.3
(-2.3)
P 		434.3
(3)
P 		197
B 266.4
(-2.2)
P 		267.9
(-2.2)
P 		235.1
(-3)
P 		341
(-0.4)
P 		354.9
(-0)
P 		475.1
(3)
P 		240
C 283.6
(-1.7)
P 		294.3
(-1.5)
P 		234.4
(-3)
P 		237.6
(-2.9)
P 		335.3
(-0.4)
P 		467.3
(3)
P 		233
avr 285.8
(-1.8) 		266.4
(-2.3) 		241.2
(-3) 		281.2
(-1.9) 		317.2
(-0.9) 		458.9
(3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 119.1
(0.8)
P 		58.9
(-3)
P 		96.9
(-0.6)
P 		155.1
(3)
P 		96
B 110.7
(-1.2)
P 		57.2
(-3)
P 		70
(-2.6)
P 		237.3
(3)
P 		180
C 110.8
(0.6)
P 		53.6
(-3)
P 		117.5
(1)
P 		148.4
(3)
P 		95
avr 113.5
(-0.2) 		56.6
(-3) 		94.8
(-1.1) 		180.3
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 56.7
(-2.8)
P 		84.3
(0.5)
P 		55.3
(-3)
P 		67.2
(-1.6)
P 		78.8
(-0.2)
P 		105.7
(3)
P 		50
B 92.7
(-1.2)
P 		89.2
(-1.4)
P 		57.1
(-3)
P 		90.3
(-1.3)
P 		144.2
(1.4)
P 		177.2
(3)
P 		120
C 105.1
(0.2)
P 		89.8
(-0.7)
P 		59.7
(-2.3)
P 		47.8
(-3)
P 		108.5
(0.4)
P 		156.4
(3)
P 		109
avr 84.8
(-1.2) 		87.8
(-1) 		57.4
(-3) 		68.4
(-2.3) 		110.5
(0.6) 		146.4
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20757
Sequence Type Exemplar sequence
Representative Public ID CEK098A1R NCBI
Target Description CEK098A1R_rc /REP_DB=TREMBL Accession /GB=D72372 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061321 NCBI Caenorhabditis elegans C03H5.3 (C03H5.3) mRNA, complete cds. 11/11 A 
SNAP00000020967 ENSEMBL cdna:SNAP chromosome:CEL140:II:386238:392537:1 10/11 None
GENEFINDER00000020975 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:385757:387820:1 11/11 None
C03H5.3 ENSEMBL cdna:known chromosome:CEL140:II:386200:387846:1 gene:C03H5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:386946-387860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03H5.3
Entrez Gene 173427 Entrez gene
SwissProt O16657 EMBL-EBI
WormBase CE07896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66127 Hypothetical protein C03H5.2 [Caenorhabditis elegans] ref|NP_493723.3| C03H5.2 [Caenorhabditis elegans] 1.0E-180
blast CAE62791 Hypothetical protein CBG06965 [Caenorhabditis briggsae] 1.0E-164
blast AAB66130 Hypothetical protein C03H5.3 [Caenorhabditis elegans] ref|NP_493722.1| C03H5.3 [Caenorhabditis elegans] 1.0E-106
blast AAB66130 Hypothetical protein C03H5.3 [Caenorhabditis elegans] ref|NP_493722.1| C03H5.3 [Caenorhabditis elegans] 1.0E-105
blast AAB66130 Hypothetical protein C03H5.3 [Caenorhabditis elegans] ref|NP_493722.1| C03H5.3 [Caenorhabditis elegans] 1.0E-104
blast CAE62790 Hypothetical protein CBG06964 [Caenorhabditis briggsae] 4.0E-29
blast CAE62790 Hypothetical protein CBG06964 [Caenorhabditis briggsae] 7.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000020967 8 297-319,329-351,434-453,473-492,505-527,542-561,568-587,591-613
Sequence
Target Sequence 
>C. ELEGANS:174673_S_AT
aattggcggccaagaagctgaagaagagaagcaagaagaaggaggcaaagaagatttctg
atggagtttttcaagttaaaatgaagaaaaggcaaaattcaacgttgtgactctcaaagc
tggtgtccagaacattttagagccacaaatcaacttccgcgaggagcttctcaaatcaag
aaccgccggaactcgtcttgccgatactgaaaagtttttgcaacgtggcaaatgggtctc
gaagcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGCGGCCAAGAAGCTGAAGAA 209 179 14 Antisense
ATTTCTGATGGAGTTTTTCAAGTTA 533 15 67 Antisense
GGCAAAATTCAACGTTGTGACTCTC 471 533 104 Antisense
TGTGACTCTCAAAGCTGGTGTCCAG 99 557 119 Antisense
GTGTCCAGAACATTTTAGAGCCACA 651 485 136 Antisense
TAGAGCCACAAATCAACTTCCGCGA 114 653 151 Antisense
AAATCAACTTCCGCGAGGAGCTTCT 389 115 160 Antisense
GGAGCTTCTCAAATCAAGAACCGCC 66 521 176 Antisense
AATCAAGAACCGCCGGAACTCGTCT 121 169 187 Antisense
GAACTCGTCTTGCCGATACTGAAAA 466 349 202 Antisense
GTGGCAAATGGGTCTCGAAGCGATA 272 491 238 Antisense
Sequence Source Affymetrix Proprietary Database