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[174672_at]

Description CEK035A4R_rc /REP_DB=TREMBL Accession /GB=D33718 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 21      6grp_total > 25      4grp_total > 38      6grp_highest_sub > 02      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1220
1 2 3 4 range
A 1821.7
(3)
P 		1062.8
(-1.6)
P 		830.8
(-3)
P 		1022.6
(-1.8)
P 		991
B 1948.6
(3)
P 		1036
(-1.5)
P 		728.4
(-3)
P 		1131.1
(-1)
P 		1220
C 1746.2
(3)
P 		873.5
(-3)
P 		894.5
(-2.9)
P 		982.7
(-2.2)
P 		873
avr 1838.8
(3) 		990.8
(-2) 		817.9
(-3) 		1045.5
(-1.7) 		1021

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 944
1 2 3 4 5 6 range
A 1646.6
(3)
P 		1500.5
(1.9)
P 		905.8
(-2.5)
P 		886.4
(-2.6)
P 		963.6
(-2.1)
P 		837.8
(-3)
P 		809
B 1545.4
(2.2)
P 		1655.2
(3)
P 		1212.9
(-0.4)
P 		1077.5
(-1.5)
P 		879
(-3)
P 		897.2
(-2.9)
P 		776
C 1357
(2.2)
P 		1462.8
(3)
P 		1415
(2.6)
P 		1160.2
(0.6)
P 		711.1
(-3)
P 		865.8
(-1.8)
P 		752
avr 1516.3
(2.8) 		1539.5
(3) 		1177.9
(-0.2) 		1041.4
(-1.3) 		851.2
(-3) 		866.9
(-2.9) 		688
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 663.3
(3)
P 		230.7
(-2.1)
P 		217.2
(-2.2)
P 		149.7
(-3)
P 		514
B 621.4
(3)
P 		255.9
(-1.8)
P 		168.8
(-3)
P 		241
(-2)
P 		453
C 578
(3)
P 		251.1
(-1.8)
P 		311.8
(-0.9)
P 		165.7
(-3)
P 		412
avr 620.9
(3) 		245.9
(-2.2) 		232.6
(-2.4) 		185.5
(-3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 303.5
(-1.1)
P 		533.7
(3)
P 		197.3
(-3)
P 		224.8
(-2.5)
P 		290.8
(-1.3)
P 		204
(-2.9)
P 		336
B 537.7
(2.7)
P 		550.9
(3)
P 		294.5
(-2.8)
P 		285.4
(-3)
P 		357.1
(-1.4)
P 		334.6
(-1.9)
P 		266
C 503
(3)
P 		446.3
(1.8)
P 		360.2
(-0.1)
P 		233.3
(-2.9)
P 		230.1
(-3)
P 		289.8
(-1.7)
P 		273
avr 448.1
(1.6) 		510.3
(3) 		284
(-2.2) 		247.8
(-3) 		292.7
(-2) 		276.1
(-2.4) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20760
Sequence Type Exemplar sequence
Representative Public ID CEK035A4R NCBI
Target Description CEK035A4R_rc /REP_DB=TREMBL Accession /GB=D33718 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062578 NCBI Caenorhabditis elegans DiSHevelled related family member (dsh-1) (dsh-1) mRNA, complete cds. 11/11 None
C34F11.9a ENSEMBL cdna:known chromosome:CEL140:II:5214777:5225350:-1 gene:C34F11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173894 3 1 NM_062577 175295_at (11)
NM_062578 174672_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5215119-5215521(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34F11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98047 Dishevelled related protein 1, isoform a [Caenorhabditis elegans] ref|NP_494979.3| DiSHevelled related family member (dsh-1) [Caenorhabditis elegans] 0.0
blast AAM98049 Dishevelled related protein 1, isoform c [Caenorhabditis elegans] ref|NP_494978.2| DiSHevelled related family member (dsh-1) [Caenorhabditis elegans] 0.0
blast T15776 hypothetical protein C34F11.9a - Caenorhabditis elegans 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.6E-25
Pfam IPR001158 EMBL-EBI DIX domain 3.9E-41
Pfam IPR003351 EMBL-EBI Dishevelled protein 1.6E-21
Sequence
Target Sequence 
>C. ELEGANS:174672_AT
agtacaccatgtacccggtattacaataagttctaatttaatattttgtaacttctaagt
ctccaatcatgaatcaaaatttcatatgttcccggtgattgtaattttggatgtttttcc
tttatttgattattctatttttgaatctgtccgtcgattttttgttgcatttccttctca
aattcacacgaattgcgatcttcttcacgagttccccacatccttgtctgaaatagatgc
accctatactaagaaaaaaaacgtcttgttttctattgcatttgccctaaaattattgtt
tatattcgatatcattgttattttctcgccccctcatttctcagtagcatgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACACCATGTACCCGGTATTACA 545 59 21 Antisense
GTAACTTCTAAGTCTCCAATCATGA 669 461 68 Antisense
AATTTCATATGTTCCCGGTGATTGT 376 175 98 Antisense
TTCTATTTTTGAATCTGTCCGTCGA 390 689 153 Antisense
CGATTTTTTGTTGCATTTCCTTCTC 192 249 175 Antisense
TTTCCTTCTCAAATTCACACGAATT 613 669 190 Antisense
GAATTGCGATCTTCTTCACGAGTTC 327 323 210 Antisense
TCCCCACATCCTTGTCTGAAATAGA 329 597 233 Antisense
ACGTCTTGTTTTCTATTGCATTTGC 221 95 281 Antisense
CGATATCATTGTTATTTTCTCGCCC 122 249 327 Antisense
CCCCTCATTTCTCAGTAGCATGTAA 155 261 350 Antisense
Sequence Source Affymetrix Proprietary Database