[Home] | [Total List]

[174669_s_at] YIB9 like

Description CEK026B5R_rc /REP_DB=TREMBL Accession /GB=D33095 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk26b5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 74      6grp_total > 08      4grp_total > 11      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1384
1 2 3 4 range
A 695.3
(-1.4)
P 		853.3
(0.8)
P 		585.3
(-3)
P 		1003.8
(3)
P 		419
B 673.8
(-3)
P 		800.5
(-2.4)
P 		748.5
(-2.7)
P 		1968.8
(3)
P 		1295
C 877.2
(-0.5)
P 		726
(-2)
P 		614.6
(-3)
P 		1252.3
(3)
P 		638
avr 748.8
(-2.2) 		793.3
(-1.9) 		649.5
(-3) 		1408.3
(3) 		759

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 809
1 2 3 4 5 6 range
A 817.6
(3)
P 		667.5
(0.5)
P 		815.1
(3)
P 		459.2
(-3)
P 		536.8
(-1.7)
P 		690.1
(0.9)
P 		358
B 1253.3
(3)
P 		516
(-2.5)
P 		700.8
(-1.1)
P 		833
(-0.1)
P 		444.2
(-3)
P 		627.1
(-1.6)
P 		809
C 845.2
(1)
P 		580.5
(-2.5)
P 		610.3
(-2.1)
P 		542.5
(-3)
P 		613.8
(-2.1)
P 		994.9
(3)
P 		452
avr 972
(3) 		588
(-2.2) 		708.7
(-0.6) 		611.6
(-1.9) 		531.6
(-3) 		770.7
(0.3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 253.1
(3)
P 		185.2
(-0.8)
P 		153
(-2.7)
P 		146.9
(-3)
P 		106
B 214.9
(-2)
P 		197.7
(-2.4)
P 		173.4
(-3)
P 		419.6
(3)
P 		246
C 290.4
(3)
P 		208.7
(-3)
P 		214.2
(-2.6)
P 		211.2
(-2.8)
P 		82
avr 252.8
(2.5) 		197.2
(-1.7) 		180.2
(-3) 		259.2
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 150.7
(-1.3)
P 		237.4
(3)
P 		177.5
(0)
P 		116.5
(-3)
P 		162
(-0.7)
P 		168
(-0.4)
P 		121
B 436.1
(3)
P 		171.8
(-3)
P 		170.2
(-3)
P 		220.6
(-1.9)
P 		180.5
(-2.8)
P 		233.8
(-1.6)
P 		266
C 313.3
(2.5)
P 		177.1
(-1.2)
P 		155.3
(-1.8)
P 		109.1
(-3)
P 		198.6
(-0.6)
P 		333
(3)
P 		224
avr 300
(3) 		195.4
(-1.1) 		167.7
(-2.2) 		148.7
(-3) 		180.4
(-1.7) 		244.9
(0.8) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174669_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22050
Sequence Type Exemplar sequence
Representative Public ID CEK026B5R NCBI
Target Description CEK026B5R_rc /REP_DB=TREMBL Accession /GB=D33095 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk26b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077693 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-6) (atf-6) mRNA, complete cds. 11/11 None
F45E6.2 ENSEMBL cdna:known chromosome:CEL140:X:12480869:12484808:1 gene:F45E6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12484484-12484798(+) 100.0 100.0
Public Domain and Genome References
Gene Title YIB9 like
Gene Symbol atf-6
Ensembl F45E6.2
Entrez Gene 181405 Entrez gene
SwissProt Q20435 EMBL-EBI
WormBase CE17828 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92180 Hypothetical protein F45E6.2 [Caenorhabditis elegans] ref|NP_510094.1| ATF (cAMP-dependent transciption factor) family member (atf-6) [Caenorhabditis elegans] 0.0
blast CAE57240 Hypothetical protein CBG00118 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR010377 EMBL-EBI Protein of unknown function DUF972 4.9E-7
Sequence
Target Sequence 
>C. ELEGANS:174669_S_AT
aaactccatacaaaatatgccagtcattgtctcaccaagttctagttgaaatcacccaat
tctcataacatagtcattcagttacaccaccattgatgatattcatctttcatgatatgt
tttattttgaaagtcactttattaatctcggggtcttaatttatatagtttgatgttcct
tttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCCATACAAAATATGCCAGTC 207 127 79 Antisense
AATATGCCAGTCATTGTCTCACCAA 572 173 92 Antisense
GTCATTGTCTCACCAAGTTCTAGTT 592 467 101 Antisense
AGTTCTAGTTGAAATCACCCAATTC 663 63 116 Antisense
ATCACCCAATTCTCATAACATAGTC 536 27 129 Antisense
ATAGTCATTCAGTTACACCACCATT 42 23 148 Antisense
TTCAGTTACACCACCATTGATGATA 354 687 155 Antisense
GATGATATTCATCTTTCATGATATG 285 411 173 Antisense
GTCACTTTATTAATCTCGGGGTCTT 524 465 211 Antisense
ATCTCGGGGTCTTAATTTATATAGT 368 5 223 Antisense
TTTATATAGTTTGATGTTCCTTTTT 411 673 238 Antisense
Sequence Source Affymetrix Proprietary Database