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[174668_at]

Description CEK098H4R_rc /REP_DB=TREMBL Accession /GB=D72429 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 80      6grp_total > 27      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 176.3
(1)
P 		145.3
(-0.6)
P 		99.8
(-3)
P 		214.2
(3)
P 		114
B 230.8
(3)
P 		156.9
(-0.5)
P 		102.7
(-3)
P 		106.1
(-2.8)
P 		128
C 218.5
(3)
P 		144.5
(-3)
P 		149.9
(-2.6)
P 		152.5
(-2.4)
P 		74
avr 208.5
(3) 		148.9
(-0.9) 		117.5
(-3) 		157.6
(-0.4) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 311.6
(3)
P 		184.2
(-0.4)
P 		84.9
(-3)
P 		89.9
(-2.9)
P 		171.6
(-0.7)
P 		217.2
(0.5)
P 		227
B 365.2
(3)
P 		266.5
(0.6)
P 		131.9
(-2.7)
P 		120.4
(-3)
P 		125.1
(-2.9)
P 		207
(-0.9)
P 		245
C 280.7
(3)
P 		221.8
(1.1)
P 		99.5
(-2.8)
P 		92.7
(-3)
P 		103.2
(-2.7)
P 		205.2
(0.6)
P 		188
avr 319.2
(3) 		224.2
(0.4) 		105.4
(-2.9) 		101
(-3) 		133.3
(-2.1) 		209.8
(-0) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 64.2
(3)
P 		31.5
(-2.1)
P 		26.1
(-3)
P 		31.4
(-2.2)
P 		38
B 73.6
(3)
P 		38.8
(-1.1)
P 		23.8
(-2.9)
P 		22.6
(-3)
P 		51
C 72.3
(3)
P 		41.5
(-1)
P 		52.2
(0.4)
P 		25.7
(-3)
P 		47
avr 70
(3) 		37.3
(-1.5) 		34
(-2) 		26.6
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 57.4
(2)
P 		65.5
(3)
P 		18.5
(-3)
P 		22.8
(-2.5)
P 		51.8
(1.3)
P 		52.9
(1.4)
P 		47
B 127.1
(3)
P 		88.7
(0.6)
P 		32
(-3)
P 		31.9
(-3)
P 		50.8
(-1.8)
P 		77.2
(-0.1)
P 		95
C 104
(3)
P 		67.7
(0.4)
P 		25.3
(-2.5)
P 		18.7
(-3)
P 		33.4
(-2)
P 		68.7
(0.5)
P 		85
avr 96.2
(3) 		74
(1.1) 		25.3
(-2.9) 		24.5
(-3) 		45.3
(-1.3) 		66.3
(0.5) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174668_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20350
Sequence Type Exemplar sequence
Representative Public ID CEK098H4R NCBI
Target Description CEK098H4R_rc /REP_DB=TREMBL Accession /GB=D72429 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F52F12.6 ENSEMBL cdna:known chromosome:CEL140:I:9911050:9918666:-1 gene:F52F12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9910990-9911305(-) 100.0 100.0
Public Domain and Genome References
Ensembl F52F12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05737 Hypothetical protein F52F12.6 [Caenorhabditis elegans] ref|NP_492622.1| F52F12.6 [Caenorhabditis elegans] 0.0
blast AAB40716 C2-HC type zinc finger protein C.e-MyT1 [Caenorhabditis elegans] 0.0
blast CAE60275 Hypothetical protein CBG03854 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 7.4E-16
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 1.8E-15
Sequence
Target Sequence 
>C. ELEGANS:174668_AT
gggatattcaaaacgtgtgtctcataaatgtaatttatattctagaatctgaaattggtt
gtttttccaaattaaaagaagtatcattgatatccccaaccctgtgtattaaatgtctta
aaatcagaaatcatcttctctcattatcacagctttaccattcaaacattcccccaaatt
gtctttttcttcaccttgtcctgctttggttgtgctttaattgtgaatttcccaactcct
ttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATATTCAAAACGTGTGTCTCAT 532 495 15 Antisense
GAATCTGAAATTGGTTGTTTTTCCA 131 329 59 Antisense
AAGTATCATTGATATCCCCAACCCT 526 157 93 Antisense
ATATCCCCAACCCTGTGTATTAAAT 690 19 104 Antisense
AAATCAGAAATCATCTTCTCTCATT 650 117 135 Antisense
CTTCTCTCATTATCACAGCTTTACC 254 221 149 Antisense
CAGCTTTACCATTCAAACATTCCCC 119 205 164 Antisense
TCAAACATTCCCCCAAATTGTCTTT 236 629 176 Antisense
TTGTCCTGCTTTGGTTGTGCTTTAA 571 705 210 Antisense
GCTTTGGTTGTGCTTTAATTGTGAA 377 303 217 Antisense
ATTGTGAATTTCCCAACTCCTTTAT 272 3 234 Antisense
Sequence Source Affymetrix Proprietary Database