[Home] | [Total List]

[174667_at]

Description CEK028C9R_rc /REP_DB=TREMBL Accession /GB=D33256 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 60      6grp_total > 28      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 03      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 436
1 2 3 4 range
A 595.4
(3)
P 		198.2
(-2.8)
P 		186.2
(-3)
P 		453
(0.9)
P 		409
B 554.8
(3)
P 		234.2
(-3)
P 		356.8
(-0.7)
P 		498.7
(2)
P 		321
C 621.7
(3)
P 		246.8
(-3)
P 		345
(-1.4)
P 		447.2
(0.2)
P 		375
avr 590.6
(3) 		226.4
(-3) 		296
(-1.9) 		466.3
(1) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 549.1
(3)
P 		496.4
(2)
P 		274.3
(-2.2)
P 		230.2
(-3)
P 		422.9
(0.6)
P 		447.2
(1.1)
P 		319
B 663.8
(3)
P 		550
(1.4)
P 		244
(-3)
P 		290.7
(-2.3)
P 		352
(-1.5)
P 		316.6
(-2)
P 		420
C 851.6
(3)
P 		421.2
(-1.4)
P 		368.9
(-1.9)
P 		266.5
(-3)
P 		364.5
(-2)
P 		312
(-2.5)
P 		585
avr 688.2
(3) 		489.2
(0.2) 		295.7
(-2.5) 		262.5
(-3) 		379.8
(-1.3) 		358.6
(-1.6) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 216.8
(3)
P 		43
(-3)
P 		48.7
(-2.8)
P 		66.3
(-2.2)
P 		174
B 176.9
(3)
P 		57.8
(-3)
P 		82.7
(-1.7)
P 		106.3
(-0.6)
P 		119
C 205.8
(3)
P 		70.9
(-3)
P 		120.2
(-0.8)
P 		75.4
(-2.8)
P 		135
avr 199.8
(3) 		57.2
(-3) 		83.9
(-1.9) 		82.7
(-1.9) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 101.2
(-0.8)
P 		176.5
(3)
P 		59.7
(-2.9)
P 		58.4
(-3)
P 		127.6
(0.5)
P 		108.9
(-0.4)
P 		118
B 231
(3)
P 		183.1
(1.3)
P 		59.2
(-3)
P 		77
(-2.4)
P 		143
(-0.1)
P 		118
(-0.9)
P 		172
C 315.7
(3)
P 		128.5
(-1.3)
P 		93.9
(-2.1)
P 		53.6
(-3)
P 		117.9
(-1.5)
P 		104.4
(-1.8)
P 		262
avr 216
(3) 		162.7
(0.9) 		70.9
(-2.7) 		63
(-3) 		129.5
(-0.4) 		110.4
(-1.1) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21328
Sequence Type Exemplar sequence
Representative Public ID CEK028C9R NCBI
Target Description CEK028C9R_rc /REP_DB=TREMBL Accession /GB=D33256 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182275 NCBI Caenorhabditis elegans mammalian WNK-type protein kinase homolog family member (wnk-1) (wnk-1) mRNA, complete cds. 11/11 None
C46C2.1b ENSEMBL cdna:known chromosome:CEL140:IV:9200094:9212200:1 gene:C46C2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177743 2 1 NM_182275 174667_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9211847-9212196(+) 68.77 100.0
Public Domain and Genome References
Ensembl C46C2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD59142 Hypothetical protein C46C2.1b [Caenorhabditis elegans] ref|NP_872075.2| mammalian WNK-type protein kinase homolog family member (wnk-1) [Caenorhabditis elegans] 0.0
blast CAA92591 Hypothetical protein C46C2.1a [Caenorhabditis elegans] ref|NP_501603.3| mammalian WNK-type protein kinase homolog family member (wnk-1) [Caenorhabditis elegans] 0.0
blast CAE74131 Hypothetical protein CBG21799 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
hanks 2.1.5 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII 1.0E-65
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 2.59999990463257
Pfam IPR000719 EMBL-EBI Protein kinase 4.3E-70
Sequence
Target Sequence 
>C. ELEGANS:174667_AT
gtttcgtgtaaactggatatccttctttccacttccctcagccctttaatgtttcttcac
agaaagttgagcaacattttctctctctctctctctttactttttcgtactgttccttta
ccataatttctgtaaatttcacgtaatctttcaaaagttcctaaaacttctactcttccc
catccaagccaactgtccttcgtttcttcttattacgagtttcgcctcttcatcgttttt
cttcttttgtttcattttgtattacttttatttctcttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCGTGTAAACTGGATATCCTTC 96 451 18 Antisense
AAACTGGATATCCTTCTTTCCACTT 553 127 27 Antisense
CTCAGCCCTTTAATGTTTCTTCACA 60 229 54 Antisense
TTTCGTACTGTTCCTTTACCATAAT 645 669 120 Antisense
ACTGTTCCTTTACCATAATTTCTGT 74 97 126 Antisense
TTCTGTAAATTTCACGTAATCTTTC 288 687 145 Antisense
TCACGTAATCTTTCAAAAGTTCCTA 580 603 156 Antisense
TGTCCTTCGTTTCTTCTTATTACGA 530 457 211 Antisense
TTATTACGAGTTTCGCCTCTTCATC 640 677 227 Antisense
TTCTTTTGTTTCATTTTGTATTACT 381 689 259 Antisense
TGTATTACTTTTATTTCTCTTCTTT 303 561 275 Antisense
Sequence Source Affymetrix Proprietary Database