[Home] | [Total List]

[174666_at]

Description CEK052C2R_rc /REP_DB=TREMBL Accession /GB=D64431 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk52c2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_total > 87      4grp_total > 24      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 113.6
(-3)
P 		277.1
(0.5)
P 		275.2
(0.5)
P 		393.4
(3)
P 		280
B 128.7
(-2.7)
P 		117.7
(-3)
P 		282.5
(1.1)
P 		360.4
(3)
P 		243
C 161.7
(-3)
P 		209.5
(-1.6)
P 		258.2
(-0.2)
P 		370.4
(3)
P 		209
avr 134.7
(-3) 		201.4
(-1.3) 		272
(0.4) 		374.7
(3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1535
1 2 3 4 5 6 range
A 31.6
(-3)
A 		83.8
(-2.8)
P 		111.7
(-2.7)
P 		283.7
(-2)
P 		699.4
(-0.3)
P 		1491.4
(3)
P 		1460
B 56.6
(-3)
M 		54.2
(-3)
P 		207.7
(-2.3)
P 		386.7
(-1.5)
P 		681.1
(-0.2)
P 		1382.7
(3)
P 		1329
C 48.5
(-3)
P 		134.2
(-2.7)
P 		196.3
(-2.4)
P 		350.8
(-1.8)
P 		926.7
(0.5)
P 		1566.6
(3)
P 		1518
avr 45.6
(-3) 		90.7
(-2.8) 		171.9
(-2.5) 		340.4
(-1.8) 		769.1
(0) 		1480.2
(3) 		1435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 41.4
(-3)
P 		60.2
(0.7)
P 		71.9
(3)
P 		57.6
(0.2)
P 		31
B 41
(-1.5)
P 		29.1
(-3)
P 		65.5
(1.6)
P 		76.8
(3)
P 		48
C 53.5
(-3)
P 		60.2
(-1.9)
P 		90
(3)
P 		62.5
(-1.5)
P 		37
avr 45.3
(-3) 		49.8
(-2.1) 		75.8
(3) 		65.6
(1) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 5.8
(-3)
A 		29.8
(-2.6)
P 		24.3
(-2.7)
P 		72
(-1.9)
P 		211.1
(0.4)
P 		363.1
(3)
P 		357
B 19.7
(-3)
M 		18.1
(-3)
P 		50.4
(-2.6)
P 		102.4
(-2)
P 		276.7
(0.1)
P 		515.6
(3)
P 		498
C 18
(-3)
P 		41
(-2.7)
P 		50
(-2.6)
P 		70.5
(-2.4)
P 		299.9
(0.3)
P 		524.4
(3)
P 		506
avr 14.5
(-3) 		29.6
(-2.8) 		41.6
(-2.6) 		81.6
(-2.1) 		262.6
(0.3) 		467.7
(3) 		453
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20753
Sequence Type Exemplar sequence
Representative Public ID CEK052C2R NCBI
Target Description CEK052C2R_rc /REP_DB=TREMBL Accession /GB=D64431 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk52c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062881 NCBI Caenorhabditis elegans ANIllin (actin binding protein) family member (ani-2) (ani-2) mRNA, complete cds. 11/11 None
K10B2.5 ENSEMBL cdna:known chromosome:CEL140:II:6361134:6365251:-1 gene:K10B2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6361140-6361465(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ani-2
Ensembl K10B2.5
Entrez Gene 174055 Entrez gene
SwissProt Q09994 EMBL-EBI
WormBase CE02012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68262 Hypothetical protein K10B2.5 [Caenorhabditis elegans] ref|NP_495282.1| ANIllin (actin binding protein) family member (ani-2) [Caenorhabditis elegans] 0.0
blast CAE59303 Hypothetical protein CBG02638 [Caenorhabditis briggsae] 0.0
blast CAA21615 Hypothetical protein Y43F8C.14 [Caenorhabditis elegans] ref|NP_507814.1| ANIllin (actin binding protein) family member (ani-3) [Caenorhabditis elegans] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 3.1E-19
Sequence
Target Sequence 
>C. ELEGANS:174666_AT
tatagtatttcttttttgcttcctttctcgttccccgtagaaattattccgttggttaag
aattatcgtttcattaggttttataagatataaaatttccccatgctcatcaactgtctc
atgatagtcacctcttttctacaattgagctgcaatttgctcagatcccccaattatttt
tcgatttttaccgctcgtgagcagcccatgactacatcattgttagtcaagtaacattat
ttttccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAGTATTTCTTTTTTGCTTCCTT 461 661 54 Antisense
GAATTATCGTTTCATTAGGTTTTAT 555 323 113 Antisense
ATATAAAATTTCCCCATGCTCATCA 542 13 141 Antisense
CCCATGCTCATCAACTGTCTCATGA 428 259 153 Antisense
AACTGTCTCATGATAGTCACCTCTT 475 143 165 Antisense
ATGATAGTCACCTCTTTTCTACAAT 321 47 174 Antisense
ACCTCTTTTCTACAATTGAGCTGCA 553 85 183 Antisense
TTTTCGATTTTTACCGCTCGTGAGC 682 675 231 Antisense
CGATTTTTACCGCTCGTGAGCAGCC 441 247 235 Antisense
GAGCAGCCCATGACTACATCATTGT 1 391 252 Antisense
TAGTCAAGTAACATTATTTTTCCCT 648 653 277 Antisense
Sequence Source Affymetrix Proprietary Database