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[174664_at] yeast hypothetical L8167.6 like

Description CEK078H1R_rc /REP_DB=TREMBL Accession /GB=D71605 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk78h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 91      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 65      6grp_total > 94      4grp_total > 01      6grp_cgc > 88      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3819
1 2 3 4 range
A 1040.3
(-3)
P 		1362.7
(-2.3)
P 		1268.7
(-2.5)
P 		3921.8
(3)
P 		2882
B 1122.1
(-2.9)
P 		1037.1
(-3)
P 		1249.6
(-2.7)
P 		4727.1
(3)
P 		3690
C 1054.1
(-2.7)
P 		908
(-3)
P 		1375.4
(-2.1)
P 		3888.4
(3)
P 		2980
avr 1072.2
(-3) 		1102.6
(-2.9) 		1297.9
(-2.6) 		4179.1
(3) 		3107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 1174.2
(-0.7)
P 		971.6
(-3)
P 		1020.5
(-2.4)
P 		972.9
(-3)
P 		1501.6
(3)
P 		1081.9
(-1.8)
P 		530
B 1208.9
(-0.5)
P 		1291.6
(1.2)
P 		1082.3
(-3)
P 		1383.1
(3)
P 		1242.8
(0.2)
P 		1228
(-0.1)
P 		301
C 1051.3
(-1.1)
P 		1340.3
(3)
P 		912.6
(-3)
P 		1237.4
(1.6)
P 		1160.4
(0.5)
P 		1216.3
(1.3)
P 		428
avr 1144.8
(-0.2) 		1201.2
(1) 		1005.1
(-3) 		1197.8
(0.9) 		1301.6
(3) 		1175.4
(0.4) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 751
1 2 3 4 range
A 378.8
(-1.2)
P 		295.8
(-3)
P 		331.7
(-2.2)
P 		574.1
(3)
P 		278
B 357.8
(-2.2)
P 		256.2
(-3)
P 		289.6
(-2.7)
P 		1007.3
(3)
P 		751
C 349
(-1.7)
P 		261.1
(-3)
P 		479.4
(0.3)
P 		655.6
(3)
P 		395
avr 361.9
(-1.9) 		271
(-3) 		366.9
(-1.8) 		745.7
(3) 		475

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 216.5
(-3)
P 		345.6
(0.3)
P 		222.3
(-2.9)
P 		246.7
(-2.2)
P 		453.1
(3)
P 		263.4
(-1.8)
P 		237
B 420.6
(0.9)
P 		429.9
(1.1)
P 		262.8
(-3)
P 		366.3
(-0.4)
P 		504.9
(3)
P 		457.9
(1.8)
P 		242
C 389.7
(2.3)
P 		409
(3)
P 		232.3
(-3)
P 		248.8
(-2.4)
P 		375.5
(1.9)
P 		407.2
(2.9)
P 		177
avr 342.3
(0) 		394.8
(1.5) 		239.1
(-3) 		287.3
(-1.6) 		444.5
(3) 		376.2
(1) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22218
Sequence Type Exemplar sequence
Representative Public ID CEK078H1R NCBI
Target Description CEK078H1R_rc /REP_DB=TREMBL Accession /GB=D71605 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk78h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077572 NCBI Caenorhabditis elegans RNAi Spreading Defective (see also sid) family member (rsd-3) (rsd-3) mRNA, complete cds. 11/11 None
C34E11.1.2 ENSEMBL cdna:known chromosome:CEL140:X:11798423:11803565:1 gene:C34E11.1 11/11 None
C34E11.1.1 ENSEMBL cdna:known chromosome:CEL140:X:11798425:11803567:1 gene:C34E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11803221-11803555(+) 100.0 100.0
Public Domain and Genome References
Gene Title yeast hypothetical L8167.6 like
Gene Symbol rsd-3
Ensembl C34E11.1
Entrez Gene 181358 Entrez gene
SwissProt Q18453 EMBL-EBI
WormBase CE03062 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251468_AT epsin N-terminal homology (ENTH) domain-containing protein at
CANINE:1604011_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE:1588387_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE_2:CFA.15301.1.S1_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE_2:CFA.17659.1.S1_S_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE_2:CFAAFFX.26536.1.S1_S_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
DROSOPHILA_2:1636557_A_AT dm
DROSGENOME1:151866_AT dm
CHICKEN:GGAAFFX.11634.1.S1_S_AT similar to Epsin 4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) gga
HG-U133_PLUS_2:201769_AT enthoprotin hs
HG-U133A:201769_AT enthoprotin hs
HG-U133A_2:201769_AT enthoprotin hs
HG-U133A_2:201768_S_AT enthoprotin hs
HG-U133A:201768_S_AT enthoprotin hs
HG-U133_PLUS_2:201768_S_AT enthoprotin hs
HU35KSUBB:RC_AA028889_S_AT enthoprotin hs
HU35KSUBD:RC_H61566_F_AT enthoprotin hs
HUGENEFL:D79993_AT enthoprotin hs
U133_X3P:G7661967_3P_AT enthoprotin hs
U133_X3P:G13325306_3P_A_AT enthoprotin hs
U133_X3P:HS.132853.0.A1_3P_AT enthoprotin hs
HG-U133_PLUS_2:230609_AT enthoprotin hs
HG-U133B:230609_AT enthoprotin hs
HG-U95AV2:40128_AT enthoprotin hs
HG-U95E:74838_S_AT enthoprotin hs
HG-U95E:74841_R_AT enthoprotin hs
HG-U95D:84736_AT enthoprotin hs
HG-U133_PLUS_2:244220_AT Enthoprotin hs
HG-U133B:244220_AT Enthoprotin hs
HG-U95B:50530_AT Enthoprotin hs
HG-U95C:57835_AT Enthoprotin hs
HG-U95E:79346_AT Enthoprotin hs
HU35KSUBD:RC_AA459347_AT Enthoprotin hs
U133_X3P:HS.192088.0.A1_3P_AT Enthoprotin hs
MG-U74BV2:106294_AT expressed sequence AI642036 mm
MG-U74BV2:114626_AT expressed sequence AI642036 mm
MOE430A:1452152_AT expressed sequence AI642036 mm
MOUSE430A_2:1452152_AT expressed sequence AI642036 mm
MOUSE430_2:1452152_AT expressed sequence AI642036 mm
MU19KSUBB:TC27905_AT expressed sequence AI642036 mm
MU19KSUBB:TC34160_AT Expressed sequence AI642036, mRNA (cDNA clone IMAGE:3592699) mm
MU19KSUBC:TC38069_AT Expressed sequence AI642036, mRNA (cDNA clone IMAGE:3592699) mm
YEAST_2:1775919_AT Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p Sc
Protein Similarities
Method ID Description E-Value
blast CAA91751 Hypothetical protein C34E11.1 [Caenorhabditis elegans] ref|NP_509973.1| RNAi Spreading Defective (see also sid) family member (rsd-3) [Caenorhabditis elegans] 0.0
blast CAE57338 Hypothetical protein CBG00274 [Caenorhabditis briggsae] 1.0E-144
blast EAL27868 GA16061-PA [Drosophila pseudoobscura] 5.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 9.5E-52
Sequence
Target Sequence 
>C. ELEGANS:174664_AT
tcatcgaaattcggtaccagtaattttatttttgtgactttttcaagccgacgtgccttt
tccaaccgactgtgttacattatccaaaaatccctcacatcacatttctaaatattctta
atttttgtatggttccttaaactctaccccgcatgtttcatgaacttgtgatatcaattt
cctgtccaacaagtagtgtcgttctcatattcggtataatttccgtagaaatggtcattg
gaattaacctctgtaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCGAAATTCGGTACCAGTAATT 290 585 59 Antisense
TTGTGACTTTTTCAAGCCGACGTGC 16 675 90 Antisense
CCTTTTCCAACCGACTGTGTTACAT 12 269 114 Antisense
GTTACATTATCCAAAAATCCCTCAC 577 443 132 Antisense
AATCCCTCACATCACATTTCTAAAT 82 169 147 Antisense
TATTCTTAATTTTTGTATGGTTCCT 544 663 171 Antisense
CTCTACCCCGCATGTTTCATGAACT 30 229 200 Antisense
GTGATATCAATTTCCTGTCCAACAA 244 485 226 Antisense
CTGTCCAACAAGTAGTGTCGTTCTC 397 239 240 Antisense
GTGTCGTTCTCATATTCGGTATAAT 315 487 254 Antisense
GTCATTGGAATTAACCTCTGTAAGG 125 467 292 Antisense
Sequence Source Affymetrix Proprietary Database