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[174663_at]

Description CEK086F2R_rc /REP_DB=TREMBL Accession /GB=D64669 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 42      6grp_total > 14      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 1124.9
(3)
P 		618.4
(-3)
P 		670.2
(-2.4)
P 		666.8
(-2.4)
P 		507
B 1296.4
(3)
P 		600.8
(-3)
P 		851.1
(-0.8)
P 		799.6
(-1.3)
P 		696
C 978.6
(3)
P 		525.2
(-3)
P 		701.4
(-0.7)
P 		829.5
(1)
P 		453
avr 1133.3
(3) 		581.5
(-3) 		740.9
(-1.3) 		765.3
(-1) 		552

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 987.3
(3)
P 		906.6
(1.8)
P 		800.8
(0.3)
P 		637.8
(-2.1)
P 		836.6
(0.8)
P 		574.8
(-3)
P 		413
B 1016.9
(3)
P 		952
(2)
P 		990.9
(2.6)
P 		898.1
(1.2)
P 		615.5
(-3)
P 		646.6
(-2.5)
P 		401
C 913.3
(1)
P 		1066.2
(3)
P 		712.2
(-1.6)
P 		863.8
(0.4)
P 		599.9
(-3)
P 		742.6
(-1.2)
P 		466
avr 972.5
(3) 		974.9
(3) 		834.6
(0.4) 		799.9
(-0.3) 		684
(-2.5) 		654.7
(-3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 409.6
(3)
P 		134.2
(-2.3)
P 		175.2
(-1.5)
P 		97.6
(-3)
P 		312
B 413.4
(3)
P 		148.4
(-3)
P 		197.2
(-1.9)
P 		170.4
(-2.5)
P 		265
C 323.9
(3)
P 		151
(-2.6)
P 		244.5
(0.4)
P 		139.9
(-3)
P 		184
avr 382.3
(3) 		144.5
(-2.8) 		205.6
(-1.3) 		136
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 182
(-1.6)
P 		322.4
(3)
P 		174.4
(-1.9)
P 		161.8
(-2.3)
P 		252.5
(0.7)
P 		140
(-3)
P 		182
B 353.8
(3)
P 		316.9
(1.1)
P 		240.6
(-2.9)
P 		237.9
(-3)
P 		250.1
(-2.4)
P 		241.1
(-2.8)
P 		116
C 338.5
(3)
P 		325.3
(2.5)
P 		181.3
(-2.7)
P 		173.7
(-3)
P 		194.1
(-2.3)
P 		248.6
(-0.3)
P 		165
avr 291.4
(1.6) 		321.5
(3) 		198.8
(-2.6) 		191.1
(-3) 		232.2
(-1.1) 		209.9
(-2.1) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20224
Sequence Type Exemplar sequence
Representative Public ID CEK086F2R NCBI
Target Description CEK086F2R_rc /REP_DB=TREMBL Accession /GB=D64669 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060422 NCBI Caenorhabditis elegans F55A3.1 (F55A3.1) mRNA, complete cds. 11/11 None
F55A3.1 ENSEMBL cdna:known chromosome:CEL140:I:10807744:10815022:1 gene:F55A3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10814636-10814929(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A3.1
Entrez Gene 172986 Entrez gene
WormBase CE37022 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:11987_AT zinc finger (C3HC4-type RING finger) family protein at
ATH1-121501:253267_AT zinc finger (C3HC4-type RING finger) family protein at
CANINE:1584691_AT similar to membrane-associated ring finger (C3HC4) 6 cfa
CANINE_2:CFA.18867.1.S1_S_AT similar to membrane-associated ring finger (C3HC4) 6 cfa
CANINE_2:CFAAFFX.15767.1.S1_S_AT similar to membrane-associated ring finger (C3HC4) 6 cfa
DROSOPHILA_2:1623889_AT dm
DROSGENOME1:153090_AT dm
HG-U133_PLUS_2:215512_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:215512_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:215512_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133_PLUS_2:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-FOCUS:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBA:RC_AA424961_S_AT membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBB:RC_AA054516_S_AT membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBB:RC_N70344_S_AT membrane-associated ring finger (C3HC4) 6 hs
HUGENEFL:AF009301_AT membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:G5032166_3P_A_AT membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:HS.20141.1.A1_3P_AT membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:HS.20141.0.A1_3P_A_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:201736_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133_PLUS_2:201736_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:201736_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U95AV2:32802_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133_PLUS_2:215902_AT Membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:215902_AT Membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:215902_AT Membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBD:RC_H78349_AT Membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:HS.102238.0.A1_3P_AT Membrane-associated ring finger (C3HC4) 6 hs
MOUSE430_2:1445928_AT membrane-associated ring finger (C3HC4) 6 mm
MOE430B:1445928_AT membrane-associated ring finger (C3HC4) 6 mm
MU11KSUBA:AA169049_S_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74AV2:104621_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74CV2:129184_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74CV2:168375_AT membrane-associated ring finger (C3HC4) 6 mm
MOE430A:1433834_AT membrane-associated ring finger (C3HC4) 6 mm
MOUSE430A_2:1433834_AT membrane-associated ring finger (C3HC4) 6 mm
MOUSE430_2:1433834_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74CV2:139168_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOE430B:1444903_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOUSE430_2:1444903_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOE430B:1457154_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOUSE430_2:1457154_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
RG-U34A:RC_AA874856_AT similar to KIAA0597 protein rn
RAE230A:1393593_AT similar to KIAA0597 protein rn
RAT230_2:1393593_AT similar to KIAA0597 protein rn
RG-U34B:RC_AA850978_AT Similar to KIAA0597 protein rn
RAE230A:1372395_AT Similar to KIAA0597 protein rn
RAT230_2:1372395_AT Similar to KIAA0597 protein rn
RAE230B:1394618_AT Similar to KIAA0597 protein rn
RAT230_2:1394618_AT Similar to KIAA0597 protein rn
RG-U34A:RC_H33075_AT Similar to KIAA0597 protein rn
Protein Similarities
Method ID Description E-Value
blast NP_492823 F55A3.1 [Caenorhabditis elegans] 0.0
blast AAZ91358 Hypothetical protein F55A3.1 [Caenorhabditis elegans] 0.0
blast CAE66833 Hypothetical protein CBG12203 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.3E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492823.2 12 134-156,187-204,419-441,456-478,491-513,547-569,607-629,756-778,844-866,886-908,929-951,966-988
F55A3.1 12 134-156,187-204,419-441,456-478,491-513,547-569,607-629,756-778,844-866,886-908,929-951,966-988
Sequence
Target Sequence 
>C. ELEGANS:174663_AT
gtctcaccacgaccgggaattagtagctaccgtacccactagagctacttggcatatttg
tggttacggtagctgtaaagtttcaatcgtgtcaagacccggtaccgtacctttgcgtca
agaggtaacaccgtacttctccaaatacttgttttttctaccattctcgctagttttccc
aactctttcccaggattttctctgtttctttcctatcttcatattcttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCACCACGACCGGGAATTAGTA 162 469 42 Antisense
ACCGTACCCACTAGAGCTACTTGGC 267 89 70 Antisense
GCTACTTGGCATATTTGTGGTTACG 162 303 85 Antisense
GTAGCTGTAAAGTTTCAATCGTGTC 609 457 110 Antisense
TCAATCGTGTCAAGACCCGGTACCG 174 629 124 Antisense
GTACCGTACCTTTGCGTCAAGAGGT 420 457 143 Antisense
AACACCGTACTTCTCCAAATACTTG 86 135 168 Antisense
ATACTTGTTTTTTCTACCATTCTCG 686 23 186 Antisense
CAACTCTTTCCCAGGATTTTCTCTG 552 187 221 Antisense
AGGATTTTCTCTGTTTCTTTCCTAT 264 57 233 Antisense
TCTTTCCTATCTTCATATTCTTTTT 603 615 248 Antisense
Sequence Source Affymetrix Proprietary Database