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[174662_at] zinc-finger protein

Description CEK044G8R_rc /REP_DB=TREMBL Accession /GB=D34355 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 77      6grp_total > 27      4grp_total > 44      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 703
1 2 3 4 range
A 1979.1
(1.7)
P 		2107.7
(3)
P 		1769.1
(-0.4)
P 		1510.2
(-3)
P 		598
B 1815
(1.9)
P 		1869.8
(3)
P 		1570.2
(-3)
P 		1709.3
(-0.2)
P 		300
C 1823.7
(1.7)
P 		1937.4
(3)
P 		1654.7
(-0.2)
P 		1404.6
(-3)
P 		533
avr 1872.6
(1.6) 		1971.6
(3) 		1664.7
(-1.3) 		1541.4
(-3) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 1947.7
(3)
P 		1566.7
(0.3)
P 		1092.5
(-3)
P 		1168.4
(-2.5)
P 		1340.7
(-1.3)
P 		1657.5
(1)
P 		855
B 1753.4
(3)
P 		1391.9
(-0.5)
P 		1128.4
(-3)
P 		1306.3
(-1.3)
P 		1139.2
(-2.9)
P 		1489.2
(0.5)
P 		625
C 1911.9
(3)
P 		1343.2
(-1.7)
P 		1601.6
(0.4)
P 		1187.5
(-3)
P 		1430.5
(-1)
P 		1545.4
(-0)
P 		724
avr 1871
(3) 		1433.9
(-1) 		1274.2
(-2.5) 		1220.7
(-3) 		1303.5
(-2.2) 		1564
(0.2) 		650
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 720.6
(3)
P 		457.5
(-0.2)
P 		462.5
(-0.1)
P 		221.1
(-3)
P 		500
B 578.8
(3)
P 		461.8
(-0.3)
P 		363.9
(-3)
P 		364.2
(-3)
P 		215
C 603.7
(3)
P 		557
(2.2)
P 		576.7
(2.6)
P 		236.8
(-3)
P 		367
avr 634.4
(3) 		492.1
(0.6) 		467.7
(0.2) 		274
(-3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 359
(-0.7)
P 		557.2
(3)
P 		237.9
(-3)
P 		296.3
(-1.9)
P 		404.6
(0.1)
P 		403.6
(0.1)
P 		319
B 610.1
(3)
P 		463.3
(0.4)
P 		274
(-3)
P 		346
(-1.7)
P 		462.8
(0.4)
P 		555.3
(2)
P 		336
C 708.6
(3)
P 		409.8
(-0.8)
P 		407.6
(-0.8)
P 		238.8
(-3)
P 		462.9
(-0.1)
P 		517.3
(0.6)
P 		470
avr 559.2
(3) 		476.8
(1.1) 		306.5
(-2.7) 		293.7
(-3) 		443.4
(0.4) 		492.1
(1.5) 		266
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21324
Sequence Type Exemplar sequence
Representative Public ID CEK044G8R NCBI
Target Description CEK044G8R_rc /REP_DB=TREMBL Accession /GB=D34355 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069772 NCBI Caenorhabditis elegans Mog interacting, Ectopic P granules family member (mep-1) (mep-1) mRNA, complete cds. 11/11 A 
M04B2.1 ENSEMBL cdna:known chromosome:CEL140:IV:11524613:11527927:1 gene:M04B2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11527516-11527910(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Gene Symbol mep-1
Ensembl M04B2.1
Entrez Gene 178074 Entrez gene
SwissProt Q21502 EMBL-EBI
WormBase CE31852 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638162_S_AT dm
DROSGENOME1:154100_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6260 DNA replication inferred from electronic annotation QuickGO AmiGO
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3910 DNA ligase (ATP) activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01235 Hypothetical protein M04B2.1 [Caenorhabditis elegans] ref|NP_502173.2| Mog interacting, Ectopic P granules family member (mep-1) [Caenorhabditis elegans] gb|AAL27004.1| nuclear zinc finger protein [Caenorhabditis elegans] 0.0
blast CAE62104 Hypothetical protein CBG06138 [Caenorhabditis briggsae] 0.0
blast EAL31340 GA11636-PA [Drosophila pseudoobscura] 6.0E-26
Sequence
Target Sequence 
>C. ELEGANS:174662_AT
ttatttctcttattctttacattcaatcattttaaatcaccagttctcccactttcattg
atatacacattctattgcgggttccggaaccgaaatcaatcagtactttactttatttcc
ccaatttttctcttcatgatatctggtttattctcgcatcttcccctaccttcaaaactc
cctatttttttttcaaaacctaactaccccacaattatcatgtaaaatcaaattgcaatt
ccccataagacagatcagtatacactttcacttcatacgtctgttgttctcccccatctc
atactttttttaccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTCTCTTATTCTTTACATTCA 474 679 59 Antisense
ATCATTTTAAATCACCAGTTCTCCC 435 29 84 Antisense
AGTTCTCCCACTTTCATTGATATAC 220 65 100 Antisense
TATACACATTCTATTGCGGGTTCCG 288 661 120 Antisense
AATTTTTCTCTTCATGATATCTGGT 563 175 181 Antisense
TATCTGGTTTATTCTCGCATCTTCC 517 659 198 Antisense
CCTAACTACCCCACAATTATCATGT 286 267 257 Antisense
ATTGCAATTCCCCATAAGACAGATC 654 3 290 Antisense
GATCAGTATACACTTTCACTTCATA 279 421 311 Antisense
TCACTTCATACGTCTGTTGTTCTCC 400 627 326 Antisense
CCCATCTCATACTTTTTTTACCATT 549 259 351 Antisense
Sequence Source Affymetrix Proprietary Database