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[174661_s_at]

Description CEK092C9R_rc /REP_DB=TREMBL Accession /GB=D66128 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk92c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_high_8_8 > 46      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1667
1 2 3 4 range
A 135.7
(-2.8)
P 		1586.4
(2.4)
P 		1744.5
(3)
P 		77.4
(-3)
A 		1667
B 109.7
(-3)
P 		1731.2
(3)
P 		1705.8
(2.9)
P 		115
(-3)
P 		1622
C 91.6
(-3)
P 		1481.1
(2.7)
P 		1564
(3)
P 		129.8
(-2.8)
P 		1472
avr 112.3
(-3) 		1599.6
(2.7) 		1671.4
(3) 		107.4
(-3) 		1564

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 999
1 2 3 4 5 6 range
A 278.2
(-3)
P 		845.5
(0.5)
P 		556.6
(-1.3)
P 		905.4
(0.9)
P 		1241.8
(3)
P 		492.4
(-1.7)
P 		964
B 263.1
(-3)
P 		906.1
(1.7)
P 		578.2
(-0.7)
P 		1075.8
(3)
P 		889.3
(1.6)
P 		511.4
(-1.2)
P 		813
C 243.3
(-3)
P 		1011.9
(3)
P 		743.9
(0.9)
P 		1006.8
(3)
P 		998.8
(2.9)
P 		492.9
(-1.1)
P 		769
avr 261.5
(-3) 		921.2
(2.1) 		626.2
(-0.2) 		996
(2.6) 		1043.3
(3) 		498.9
(-1.2) 		782
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 49.4
(-2.5)
P 		344.4
(1.5)
P 		456
(3)
P 		11.3
(-3)
A 		445
B 35
(-2.8)
P 		427.6
(3)
P 		395.3
(2.5)
P 		24.5
(-3)
P 		403
C 30.3
(-2.9)
P 		425.8
(1.6)
P 		545.1
(3)
P 		21.9
(-3)
P 		523
avr 38.2
(-2.7) 		399.3
(2.1) 		465.5
(3) 		19.2
(-3) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 51.3
(-3)
P 		300.7
(1.6)
P 		121.2
(-1.7)
P 		229.6
(0.3)
P 		374.7
(3)
P 		119.9
(-1.7)
P 		323
B 91.5
(-3)
P 		301.6
(1.7)
P 		140.4
(-1.9)
P 		284.9
(1.3)
P 		361.3
(3)
P 		190.7
(-0.8)
P 		270
C 90.2
(-3)
P 		308.8
(2.6)
P 		189.3
(-0.4)
P 		202.5
(-0.1)
P 		323.2
(3)
P 		165
(-1.1)
P 		233
avr 77.7
(-3) 		303.7
(1.9) 		150.3
(-1.4) 		239
(0.5) 		353.1
(3) 		158.5
(-1.2) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174661_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21777
Sequence Type Exemplar sequence
Representative Public ID CEK092C9R NCBI
Target Description CEK092C9R_rc /REP_DB=TREMBL Accession /GB=D66128 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk92c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028971(11), NM_001028972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028971 NCBI Caenorhabditis elegans T19A5.3a (T19A5.3) mRNA, complete cds. 11/11 None
NM_001028972 NCBI Caenorhabditis elegans T19A5.3b (T19A5.3) mRNA, complete cds. 11/11 None
T19A5.3a ENSEMBL cdna:known chromosome:CEL140:V:8942205:8946650:-1 gene:T19A5.3 11/11 None
T19A5.3b ENSEMBL cdna:known chromosome:CEL140:V:8942211:8945529:-1 gene:T19A5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8942221-8942542(-) 100.0 100.0
Public Domain and Genome References
Ensembl T19A5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69039 Hypothetical protein T19A5.3a [Caenorhabditis elegans] ref|NP_001024142.1| T19A5.3a [Caenorhabditis elegans] 0.0
blast CAE72052 Hypothetical protein CBG19137 [Caenorhabditis briggsae] 0.0
blast AAQ91899 Hypothetical protein T19A5.3b [Caenorhabditis elegans] ref|NP_001024143.1| T19A5.3b [Caenorhabditis elegans] 1.0E-143
blast AAC69039 Hypothetical protein T19A5.3a [Caenorhabditis elegans] ref|NP_001024142.1| T19A5.3a [Caenorhabditis elegans] 1.0E-132
blast AAQ91899 Hypothetical protein T19A5.3b [Caenorhabditis elegans] ref|NP_001024143.1| T19A5.3b [Caenorhabditis elegans] 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174661_S_AT
tcttctcctctttcacattgaattcccctaatttattttttagtttttattttacaaaat
tcaattcaccagagtctcactacctaactcattcccttctcatagttttattccccactt
ttttcttccttcttctgcatttccactgcatttcgatcgacctcaaaacgggataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCCTCTTTCACATTGAATTC 584 617 31 Antisense
TTCACATTGAATTCCCCTAATTTAT 277 685 42 Antisense
AAATTCAATTCACCAGAGTCTCACT 454 115 87 Antisense
TTCACCAGAGTCTCACTACCTAACT 61 685 95 Antisense
AGAGTCTCACTACCTAACTCATTCC 627 67 101 Antisense
AACTCATTCCCTTCTCATAGTTTTA 102 141 116 Antisense
TCTCATAGTTTTATTCCCCACTTTT 477 611 128 Antisense
CTTCTGCATTTCCACTGCATTTCGA 568 219 162 Antisense
GCATTTCCACTGCATTTCGATCGAC 251 309 167 Antisense
ACTGCATTTCGATCGACCTCAAAAC 228 97 175 Antisense
TTCGATCGACCTCAAAACGGGATAA 586 687 182 Antisense
Sequence Source Affymetrix Proprietary Database