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[174660_at]

Description CEK092C9R_rc /REP_DB=TREMBL Accession /GB=D66128 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk92c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 62      6grp_total > 82      4grp_total > 57      6grp_cgc > 98      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1675
1 2 3 4 range
A 33.2
(-3)
A 		1127.7
(1)
P 		1680.3
(3)
P 		60.6
(-2.9)
A 		1647
B 5.4
(-3)
A 		1213.3
(3)
P 		914.7
(1.5)
P 		28.4
(-2.9)
A 		1208
C 57.7
(-3)
A 		1098.8
(1.5)
P 		1439.2
(3)
P 		61.1
(-3)
A 		1382
avr 32.1
(-3) 		1146.6
(2.1) 		1344.7
(3) 		50
(-2.9) 		1313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 952
1 2 3 4 5 6 range
A 175.7
(-3)
P 		580.2
(-0.3)
P 		345
(-1.9)
P 		455.5
(-1.1)
P 		1075.8
(3)
P 		277.8
(-2.3)
P 		900
B 195.4
(-3)
P 		651.8
(2.1)
P 		288.9
(-2)
P 		682.7
(2.4)
P 		737.3
(3)
P 		384
(-0.9)
P 		542
C 123.8
(-3)
P 		634.9
(1.5)
P 		351.5
(-1)
P 		561.7
(0.8)
P 		809.7
(3)
P 		278.1
(-1.7)
P 		686
avr 165
(-3) 		622.3
(0.9) 		328.5
(-1.6) 		566.6
(0.4) 		874.3
(3) 		313.3
(-1.7) 		709
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 12.1
(-3)
A 		244.8
(0.3)
P 		439.3
(3)
P 		8.9
(-3)
A 		430
B 1.7
(-3)
A 		299.7
(3)
P 		212
(1.2)
P 		6.1
(-2.9)
A 		298
C 19.1
(-2.9)
A 		315.9
(0.7)
P 		501.6
(3)
P 		10.3
(-3)
A 		491
avr 11
(-3) 		286.8
(1.4) 		384.3
(3) 		8.4
(-3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 32.4
(-3)
P 		206.4
(0.6)
P 		75.1
(-2.1)
P 		115.5
(-1.3)
P 		324.6
(3)
P 		67.6
(-2.3)
P 		292
B 68
(-3)
P 		216.9
(0.9)
P 		70.1
(-2.9)
P 		180.8
(-0.1)
P 		299.6
(3)
P 		143.2
(-1.1)
P 		232
C 45.9
(-3)
P 		193.7
(1.1)
P 		89.5
(-1.8)
P 		113
(-1.1)
P 		262
(3)
P 		93.1
(-1.7)
P 		216
avr 48.8
(-3) 		205.7
(0.8) 		78.2
(-2.3) 		136.4
(-0.9) 		295.4
(3) 		101.3
(-1.7) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21777
Sequence Type Exemplar sequence
Representative Public ID CEK092C9R NCBI
Target Description CEK092C9R_rc /REP_DB=TREMBL Accession /GB=D66128 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk92c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028971(11), NM_001028972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028971 NCBI Caenorhabditis elegans T19A5.3a (T19A5.3) mRNA, complete cds. 11/11 None
NM_001028972 NCBI Caenorhabditis elegans T19A5.3b (T19A5.3) mRNA, complete cds. 11/11 None
T19A5.3a ENSEMBL cdna:known chromosome:CEL140:V:8942205:8946650:-1 gene:T19A5.3 11/11 None
T19A5.3b ENSEMBL cdna:known chromosome:CEL140:V:8942211:8945529:-1 gene:T19A5.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8942221-8942542(-) 100.0 100.0
Public Domain and Genome References
Ensembl T19A5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69039 Hypothetical protein T19A5.3a [Caenorhabditis elegans] ref|NP_001024142.1| T19A5.3a [Caenorhabditis elegans] 0.0
blast CAE72052 Hypothetical protein CBG19137 [Caenorhabditis briggsae] 0.0
blast AAQ91899 Hypothetical protein T19A5.3b [Caenorhabditis elegans] ref|NP_001024143.1| T19A5.3b [Caenorhabditis elegans] 1.0E-143
blast AAC69039 Hypothetical protein T19A5.3a [Caenorhabditis elegans] ref|NP_001024142.1| T19A5.3a [Caenorhabditis elegans] 1.0E-132
blast AAQ91899 Hypothetical protein T19A5.3b [Caenorhabditis elegans] ref|NP_001024143.1| T19A5.3b [Caenorhabditis elegans] 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174660_AT
ctcaaaacgggataactcacatttttcgagcaactcgaatttgtttgcgaacactctttc
tttgtctgttcattcttttgattctgctcagttttttttgccatccactatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAAACGGGATAACTCACATTTT 441 223 192 Antisense
AACTCACATTTTTCGAGCAACTCGA 427 139 205 Antisense
GAGCAACTCGAATTTGTTTGCGAAC 78 391 219 Antisense
TGTTTGCGAACACTCTTTCTTTGTC 159 561 233 Antisense
TTTGCGAACACTCTTTCTTTGTCTG 115 669 235 Antisense
AACACTCTTTCTTTGTCTGTTCATT 86 137 241 Antisense
CTTTCTTTGTCTGTTCATTCTTTTG 204 223 247 Antisense
GTCTGTTCATTCTTTTGATTCTGCT 574 471 255 Antisense
GTTCATTCTTTTGATTCTGCTCAGT 597 443 259 Antisense
GATTCTGCTCAGTTTTTTTTGCCAT 90 433 271 Antisense
TCAGTTTTTTTTGCCATCCACTATT 159 623 279 Antisense
Sequence Source Affymetrix Proprietary Database