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[174659_at]

Description CEK083H8R_rc /REP_DB=TREMBL Accession /GB=D71925 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk83h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 09      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 64      6grp_total > 92      4grp_total > 62      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 660.6
(3)
P 		446.8
(-0.8)
P 		454
(-0.7)
P 		325.7
(-3)
P 		335
B 592.6
(3)
P 		576
(2.6)
P 		537.1
(1.6)
P 		350.1
(-3)
P 		243
C 645
(3)
P 		435.8
(-3)
P 		545.1
(0.1)
P 		462.6
(-2.2)
P 		209
avr 632.7
(3) 		486.2
(-0.5) 		512.1
(0.1) 		379.5
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 848
1 2 3 4 5 6 range
A 814.9
(-0.6)
P 		856.7
(-0.3)
P 		506.5
(-3)
P 		746.8
(-1.1)
P 		1273.6
(3)
P 		670.6
(-1.7)
P 		767
B 794.2
(0.4)
P 		928
(1.6)
P 		425.7
(-3)
P 		1083.8
(3)
P 		927.8
(1.6)
P 		607.6
(-1.3)
P 		658
C 822.5
(0.4)
P 		803.5
(0.2)
P 		598.2
(-2.3)
P 		795
(0.1)
P 		1033.9
(3)
P 		539.9
(-3)
P 		494
avr 810.5
(0.2) 		862.7
(0.7) 		510.1
(-3) 		875.2
(0.9) 		1078.4
(3) 		606
(-2) 		568
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 240.5
(3)
P 		97
(-1.5)
P 		118.7
(-0.8)
P 		47.7
(-3)
P 		193
B 189
(3)
P 		142.3
(0.6)
P 		124.4
(-0.4)
P 		74.6
(-3)
P 		114
C 213.5
(3)
P 		125.3
(-0.9)
P 		190
(2)
P 		78
(-3)
P 		136
avr 214.3
(3) 		121.5
(-0.8) 		144.4
(0.2) 		66.8
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 150.2
(-2.1)
P 		304.7
(1.3)
P 		110.3
(-3)
P 		189.4
(-1.3)
P 		384.3
(3)
P 		163.3
(-1.8)
P 		274
B 276.4
(0.8)
P 		308.9
(1.5)
P 		103.4
(-3)
P 		287.1
(1)
P 		377
(3)
P 		226.6
(-0.3)
P 		274
C 304.9
(2)
P 		245.2
(0.1)
P 		152.3
(-3)
P 		159.9
(-2.7)
P 		334.6
(3)
P 		180.7
(-2.1)
P 		182
avr 243.8
(0) 		286.3
(1.1) 		122
(-3) 		212.1
(-0.8) 		365.3
(3) 		190.2
(-1.3) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20551
Sequence Type Exemplar sequence
Representative Public ID CEK083H8R NCBI
Target Description CEK083H8R_rc /REP_DB=TREMBL Accession /GB=D71925 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk83h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C18D1.1.2 ENSEMBL cdna:known chromosome:CEL140:II:10061238:10074354:-1 gene:C18D1.1 11/11 None
C18D1.1.1 ENSEMBL cdna:known chromosome:CEL140:II:10061238:10067891:-1 gene:C18D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10061276-10061615(-) 100.0 100.0
Public Domain and Genome References
Ensembl C18D1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88432 Hypothetical protein C18D1.1 [Caenorhabditis elegans] ref|NP_496175.1| Dorsal Intercalation and Elongation defect family member (die-1) [Caenorhabditis elegans] 0.0
blast CAE59348 Hypothetical protein CBG02697 [Caenorhabditis briggsae] 0.0
blast CAE59349 Hypothetical protein CBG02698 [Caenorhabditis briggsae] 6.0E-47
Sequence
Target Sequence 
>C. ELEGANS:174659_AT
gattttctagtttttgatctcttttatttaatggcttcaatctcttttccaatcttctac
caaagttgaaaatagtctctgccatatatttgtttttccattttatttttaaaattaggt
tattttatacctcctctgtgaaaattattcccaaaacatgctacctactgttccaatgtc
gccttcctactttatcaaatataatttattacttgatcatcagaaaatcaatcaacactt
ttttcttctttattcaatcttaatttcctaattactcatgtcattcatctcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTCTAGTTTTTGATCTCTTTT 454 429 25 Antisense
GATCTCTTTTATTTAATGGCTTCAA 382 419 40 Antisense
ATGGCTTCAATCTCTTTTCCAATCT 413 53 55 Antisense
TCTCTTTTCCAATCTTCTACCAAAG 253 613 65 Antisense
AAAGTTGAAAATAGTCTCTGCCATA 290 123 86 Antisense
CTCTGCCATATATTTGTTTTTCCAT 11 233 101 Antisense
GGTTATTTTATACCTCCTCTGTGAA 143 507 142 Antisense
ATTATTCCCAAAACATGCTACCTAC 636 13 168 Antisense
ACATGCTACCTACTGTTCCAATGTC 441 107 180 Antisense
TTTTTCTTCTTTATTCAATCTTAAT 513 675 264 Antisense
TAATTACTCATGTCATTCATCTCTA 249 635 293 Antisense
Sequence Source Affymetrix Proprietary Database