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[174658_at]

Description CEK097H5R_rc /REP_DB=TREMBL Accession /GB=D72356 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 51      6grp_total > 02      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 736.2
(3)
P 		368.9
(-3)
P 		434.1
(-1.9)
P 		730.3
(2.9)
P 		367
B 680.1
(3)
P 		497.8
(-0.6)
P 		378.1
(-3)
P 		503.5
(-0.5)
P 		302
C 585.2
(3)
P 		585.2
(3)
P 		398.6
(-3)
P 		572.3
(2.6)
P 		187
avr 667.2
(3) 		484
(-1.2) 		403.6
(-3) 		602
(1.5) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 578
1 2 3 4 5 6 range
A 836.1
(3)
P 		599.3
(-0.3)
P 		403.7
(-3)
P 		486.8
(-1.8)
P 		616.1
(-0.1)
P 		564
(-0.8)
P 		432
B 565.4
(0.8)
P 		639.7
(1.8)
P 		258.5
(-3)
P 		739.3
(3)
P 		539.1
(0.5)
P 		520.6
(0.3)
P 		481
C 483.5
(0.2)
P 		632.6
(3)
P 		508.3
(0.6)
P 		377.6
(-1.9)
P 		533.7
(1.1)
P 		318.1
(-3)
P 		315
avr 628.3
(3) 		623.9
(2.9) 		390.2
(-3) 		534.6
(0.6) 		563
(1.4) 		467.6
(-1) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 268
(3)
P 		80.1
(-3)
P 		113.5
(-1.9)
P 		106.9
(-2.1)
P 		188
B 216.9
(3)
P 		123
(-1.4)
P 		87.6
(-3)
P 		107.3
(-2.1)
P 		129
C 193.7
(3)
P 		168.2
(1.4)
P 		138.9
(-0.4)
P 		96.5
(-3)
P 		97
avr 226.2
(3) 		123.8
(-2) 		113.3
(-2.5) 		103.6
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 154.1
(0.2)
P 		213.2
(3)
P 		87.9
(-3)
P 		123.5
(-1.3)
P 		185.9
(1.7)
P 		137.3
(-0.6)
P 		125
B 196.7
(2.1)
P 		212.9
(2.8)
P 		62.8
(-3)
P 		195.8
(2.1)
P 		219
(3)
P 		194.1
(2)
P 		156
C 179.2
(2.3)
P 		193
(3)
P 		129.4
(-0.3)
P 		75.9
(-3)
P 		172.7
(2)
P 		106.5
(-1.4)
P 		117
avr 176.7
(1.4) 		206.4
(3) 		93.4
(-3) 		131.7
(-1) 		192.5
(2.3) 		146
(-0.2) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21818
Sequence Type Exemplar sequence
Representative Public ID CEK097H5R NCBI
Target Description CEK097H5R_rc /REP_DB=TREMBL Accession /GB=D72356 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074194 NCBI Caenorhabditis elegans R02D5.1 (R02D5.1) mRNA, complete cds. 11/11 None
R02D5.1 ENSEMBL cdna:known chromosome:CEL140:V:14510842:14512231:1 gene:R02D5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14511904-14512221(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D5.1
Entrez Gene 179956 Entrez gene
SwissProt Q21636 EMBL-EBI
WormBase CE12486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01433 Hypothetical protein R02D5.1 [Caenorhabditis elegans] ref|NP_506595.1| R02D5.1 [Caenorhabditis elegans] 3.0E-93
blast CAE60883 Hypothetical protein CBG04595 [Caenorhabditis briggsae] 9.0E-54
Sequence
Target Sequence 
>C. ELEGANS:174658_AT
ttcatttttattcgagttgcctcttctctctctgttcccccaaatccataaatcaacacg
ggcaaatccccatctttctcttagccgctttagtttcctatgtattttgctcccatcagc
attctgaattttcaacggtctttgtgtacatttcctttcctatccctccactatcattct
tcccttccctccaaaaagcatcgtctctcaacgttctcgttttctcacggatttccgatt
caaaccaaaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTTTTATTCGAGTTGCCTCTT 624 687 15 Antisense
TGTTCCCCCAAATCCATAAATCAAC 133 563 47 Antisense
TCAACACGGGCAAATCCCCATCTTT 238 629 67 Antisense
TTCTCTTAGCCGCTTTAGTTTCCTA 313 691 90 Antisense
TAGTTTCCTATGTATTTTGCTCCCA 461 653 105 Antisense
TATTTTGCTCCCATCAGCATTCTGA 323 663 117 Antisense
AGCATTCTGAATTTTCAACGGTCTT 417 77 132 Antisense
TTCAACGGTCTTTGTGTACATTTCC 598 683 145 Antisense
AAAAAGCATCGTCTCTCAACGTTCT 671 129 207 Antisense
TTCTCGTTTTCTCACGGATTTCCGA 177 689 228 Antisense
GGATTTCCGATTCAAACCAAAACAT 150 507 243 Antisense
Sequence Source Affymetrix Proprietary Database