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[174656_at]

Description CEK088D5R_rc /REP_DB=TREMBL Accession /GB=D64773 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88d5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 83      6grp_total > 39      4grp_total > 07      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 593.1
(3)
P 		433.4
(-2.5)
P 		472.4
(-1.2)
P 		420.4
(-3)
P 		173
B 531.9
(3)
P 		206.6
(-3)
P 		478.7
(2)
P 		374.3
(0.1)
P 		325
C 389
(-3)
P 		398.1
(-2.8)
P 		390.6
(-3)
P 		676.1
(3)
P 		287
avr 504.7
(3) 		346
(-3) 		447.2
(0.8) 		490.3
(2.5) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 514
1 2 3 4 5 6 range
A 768.8
(2.7)
P 		459.5
(-2.4)
P 		419.7
(-3)
P 		463.3
(-2.3)
P 		788.5
(3)
P 		593.9
(-0.2)
P 		369
B 617.9
(2.9)
P 		543.5
(1.6)
P 		274.3
(-3)
P 		470
(0.4)
P 		418.1
(-0.5)
P 		624.2
(3)
P 		350
C 489.6
(3)
P 		386.1
(-1.3)
P 		418.5
(0.1)
P 		433.6
(0.7)
P 		354.8
(-2.5)
P 		343.7
(-3)
P 		146
avr 625.4
(3) 		463
(-0.8) 		370.8
(-3) 		455.6
(-1) 		520.5
(0.5) 		520.6
(0.5) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 216
(3)
P 		94.1
(-1.7)
P 		123.5
(-0.6)
P 		61.5
(-3)
P 		155
B 169.6
(3)
P 		51
(-3)
P 		110.9
(0)
P 		79.8
(-1.5)
P 		119
C 128.8
(1)
P 		114.5
(-2.9)
P 		136.1
(3)
P 		114
(-3)
P 		22
avr 171.5
(3) 		86.5
(-2.9) 		123.5
(-0.3) 		85.1
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 141.7
(-0.9)
P 		163.4
(-0.1)
P 		91.4
(-3)
P 		117.5
(-1.9)
P 		237.9
(3)
P 		144.6
(-0.8)
P 		147
B 215
(2.4)
P 		180.9
(1.1)
P 		66.6
(-3)
P 		124.5
(-0.9)
P 		169.9
(0.7)
P 		232.8
(3)
P 		166
C 181.5
(3)
P 		117.8
(-1.1)
P 		106.5
(-1.8)
P 		87.2
(-3)
P 		114.8
(-1.2)
P 		115
(-1.2)
P 		94
avr 179.4
(3) 		154
(1.3) 		88.2
(-3) 		109.7
(-1.6) 		174.2
(2.7) 		164.1
(2) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20745
Sequence Type Exemplar sequence
Representative Public ID CEK088D5R NCBI
Target Description CEK088D5R_rc /REP_DB=TREMBL Accession /GB=D64773 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062513 NCBI Caenorhabditis elegans Ubiquitin-Like Protease family member (ulp-2) (ulp-2) mRNA, complete cds. 11/11 None
Y38A8.3 ENSEMBL cdna:known chromosome:CEL140:II:4955631:4959836:-1 gene:Y38A8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4955653-4955988(-) 91.64 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ulp-2
Ensembl Y38A8.3
Entrez Gene 173859 Entrez gene
SwissProt Q23238 EMBL-EBI
WormBase CE29374 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98019 Ubiquitin-like protease protein 2 [Caenorhabditis elegans] ref|NP_494914.1| Ubiquitin-Like Protease family member (ulp-2) [Caenorhabditis elegans] 0.0
blast CAE59014 Hypothetical protein CBG02290 [Caenorhabditis briggsae] 1.0E-157
blast NP_172444 Ulp1 protease family protein [Arabidopsis thaliana] 2.0E-19
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 4.90000009536743
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.9E-65
Sequence
Target Sequence 
>C. ELEGANS:174656_AT
tgatcaaaaatttgtctcccctctcaaaaattgccggtattttcttctcttagttaattt
attttttaaagattttattatcctcccatttttacgctctctccttatttctgcgttctc
cgtcataaagtgacaattgttattttttctttataacttgatcactcaatttaatatttt
cagttgatctccactcttttttcctccttttattaaaatttcaatattctgttccatcaa
ttttccttttgtacacccatttcacatctccgcaacggtttctaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCAAAAATTTGTCTCCCCTCTC 430 565 19 Antisense
CTCCCCTCTCAAAAATTGCCGGTAT 278 233 34 Antisense
TATTTTCTTCTCTTAGTTAATTTAT 402 661 56 Antisense
TTAAAGATTTTATTATCCTCCCATT 220 683 84 Antisense
TTCTGCGTTCTCCGTCATAAAGTGA 454 691 127 Antisense
TTTTCTTTATAACTTGATCACTCAA 132 677 163 Antisense
AAAATTTCAATATTCTGTTCCATCA 372 133 233 Antisense
TATTCTGTTCCATCAATTTTCCTTT 178 663 243 Antisense
TCAATTTTCCTTTTGTACACCCATT 547 633 255 Antisense
TTTCACATCTCCGCAACGGTTTCTA 289 671 278 Antisense
ACATCTCCGCAACGGTTTCTAAATT 307 105 282 Antisense
Sequence Source Affymetrix Proprietary Database