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[174655_at]

Description CEK039E2R_rc /REP_DB=TREMBL Accession /GB=D34002 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 74      6grp_total > 39      4grp_total > 55      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 523
1 2 3 4 range
A 735.6
(3)
P 		285.7
(-3)
P 		597.3
(1.2)
P 		541.7
(0.4)
P 		450
B 616.1
(3)
P 		374.9
(-3)
P 		506.8
(0.3)
P 		567
(1.8)
P 		241
C 808.3
(3)
P 		656.5
(-0.2)
P 		665.9
(-0)
P 		526.3
(-3)
P 		282
avr 720
(3) 		439
(-3) 		590
(0.2) 		545
(-0.7) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 690
1 2 3 4 5 6 range
A 536.5
(-2.4)
P 		735.3
(0.1)
P 		487.9
(-3)
P 		567.3
(-2)
P 		963.7
(3)
P 		739.8
(0.2)
P 		476
B 864
(3)
P 		667.3
(1)
P 		274
(-3)
P 		646.8
(0.8)
P 		802.8
(2.4)
P 		612.9
(0.4)
P 		590
C 857.4
(3)
P 		601.3
(-0.3)
P 		641.9
(0.2)
P 		392.1
(-3)
P 		814.7
(2.4)
P 		701.7
(1)
P 		465
avr 752.6
(1.4) 		668
(0.1) 		467.9
(-3) 		535.4
(-2) 		860.4
(3) 		684.8
(0.3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 267.8
(3)
P 		62
(-3)
P 		156.2
(-0.3)
P 		79.3
(-2.5)
P 		206
B 196.5
(3)
P 		92.6
(-3)
P 		117.4
(-1.6)
P 		120.8
(-1.4)
P 		104
C 267.6
(3)
P 		188.8
(0.4)
P 		232.1
(1.8)
P 		88.8
(-3)
P 		179
avr 244
(3) 		114.5
(-2.3) 		168.6
(-0.1) 		96.3
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 98.9
(-3)
P 		261.5
(2.1)
P 		106.2
(-2.8)
P 		143.9
(-1.6)
P 		290.8
(3)
P 		180.1
(-0.5)
P 		192
B 300.6
(2.4)
P 		222.1
(0.6)
P 		66.5
(-3)
P 		171.3
(-0.6)
P 		326.2
(3)
P 		228.6
(0.7)
P 		260
C 317.8
(3)
P 		183.5
(-0.4)
P 		163.4
(-0.9)
P 		78.9
(-3)
P 		263.6
(1.6)
P 		234.9
(0.9)
P 		239
avr 239.1
(1.2) 		222.4
(0.6) 		112
(-3) 		131.4
(-2.4) 		293.5
(3) 		214.5
(0.4) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21320
Sequence Type Exemplar sequence
Representative Public ID CEK039E2R NCBI
Target Description CEK039E2R_rc /REP_DB=TREMBL Accession /GB=D34002 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028371 NCBI Caenorhabditis elegans Y59H11AR.2a (Y59H11AR.2) mRNA, complete cds. 11/11 None
Y59H11AR.2a.2 ENSEMBL cdna:known chromosome:CEL140:IV:8585524:8594579:1 gene:Y59H11AR.2 11/11 None
Y59H11AR.2a.1 ENSEMBL cdna:known chromosome:CEL140:IV:8585550:8594595:1 gene:Y59H11AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177664 3 1 NM_001028371 174655_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8594141-8594572(+) 98.95 98.95
Public Domain and Genome References
Ensembl Y59H11AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59622 Hypothetical protein Y59H11AR.2a [Caenorhabditis elegans] ref|NP_001023542.1| Y59H11AR.2a [Caenorhabditis elegans] 0.0
blast AAP13732 Hypothetical protein Y59H11AR.2b [Caenorhabditis elegans] ref|NP_001023543.1| Y59H11AR.2b [Caenorhabditis elegans] 0.0
blast CAE56597 Hypothetical protein CBG24344 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A1A3_HUMAN (P13637) Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9) (Sodium pump 3) (Na+/K+ ATPase 3) (Alpha(III)) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.9E-9
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 2.3E-7
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 2.0E-6
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 8.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023542.1 11 64-86,213-235,239-257,412-434,449-468,903-925,930-947,979-1001,1016-1038,1051-1073,1088-1105
Y59H11AR.2a.2 11 64-86,213-235,239-257,412-434,449-468,903-925,930-947,979-1001,1016-1038,1051-1073,1088-1105
Y59H11AR.2a.1 11 64-86,213-235,239-257,412-434,449-468,903-925,930-947,979-1001,1016-1038,1051-1073,1088-1105
Sequence
Target Sequence 
>C. ELEGANS:174655_AT
ttcacatttttcataaccagctttagatattttattggttttcccatttgttcttccatt
tccaaaaactctaattctctatcaagttctatttcgaaattcttctatctatcctgattt
tcctctcattctcataatcataattatgttatcagttttactcctgtttttcttttgcga
attcccgattcacacacatttccccgtttttcaaacaaaacactttttttacatgtatcc
attccataattcgtcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACATTTTTCATAACCAGCTTTA 298 685 91 Antisense
GATATTTTATTGGTTTTCCCATTTG 257 421 116 Antisense
TTTCCAAAAACTCTAATTCTCTATC 602 665 149 Antisense
AATTCTCTATCAAGTTCTATTTCGA 364 177 163 Antisense
TCGAAATTCTTCTATCTATCCTGAT 572 601 184 Antisense
TCTTCTATCTATCCTGATTTTCCTC 194 617 191 Antisense
TATCAGTTTTACTCCTGTTTTTCTT 400 659 240 Antisense
TGTTTTTCTTTTGCGAATTCCCGAT 25 561 255 Antisense
CGAATTCCCGATTCACACACATTTC 594 253 268 Antisense
AACACTTTTTTTACATGTATCCATT 695 135 309 Antisense
GTATCCATTCCATAATTCGTCACTG 524 455 325 Antisense
Sequence Source Affymetrix Proprietary Database