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[174653_s_at]

Description CEK075F9R_rc /REP_DB=TREMBL Accession /GB=D71464 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk75f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 37      6grp_total > 99      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17089
1 2 3 4 range
A 8916.1
(-2.4)
P 		7573
(-2.9)
P 		7348.7
(-3)
P 		24334.7
(3)
P 		16986
B 8511.6
(-2.4)
P 		7245.4
(-3)
P 		8235
(-2.6)
P 		20887.8
(3)
P 		13642
C 8458.4
(-2.6)
P 		7990.9
(-2.8)
P 		7377.7
(-3)
P 		22133.9
(3)
P 		14756
avr 8628.7
(-2.6) 		7603.1
(-3) 		7653.8
(-3) 		22452.1
(3) 		14849

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3641
1 2 3 4 5 6 range
A 5494.7
(-0.4)
P 		4650.7
(-2)
P 		4139.4
(-3)
P 		5379.8
(-0.6)
P 		6075.1
(0.8)
P 		7229.4
(3)
P 		3090
B 5352.2
(0)
P 		4725.1
(-1)
P 		3588.7
(-3)
P 		4252.1
(-1.9)
P 		7061.2
(3)
P 		5569.5
(0.4)
P 		3473
C 5665.3
(0.3)
P 		4371.5
(-2.1)
P 		3868.5
(-3)
P 		4284.7
(-2.2)
P 		7174.4
(3)
P 		6932.9
(2.6)
P 		3306
avr 5504.1
(0.4) 		4582.4
(-1.5) 		3865.5
(-3) 		4638.9
(-1.4) 		6770.2
(3) 		6577.3
(2.6) 		2905
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2807
1 2 3 4 range
A 3246.3
(2)
P 		1643.9
(-3)
P 		1921.1
(-2.1)
P 		3562.1
(3)
P 		1918
B 2714.3
(-0.9)
P 		1789.4
(-3)
P 		1908.2
(-2.7)
P 		4451.2
(3)
P 		2662
C 2800
(-0.9)
P 		2297.4
(-3)
P 		2571.4
(-1.9)
P 		3732.1
(3)
P 		1435
avr 2920.2
(0) 		1910.2
(-3) 		2133.6
(-2.3) 		3915.1
(3) 		2005

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2007
1 2 3 4 5 6 range
A 1012.9
(-2.3)
P 		1654
(1.8)
P 		901.5
(-3)
P 		1364.4
(-0)
P 		1833.2
(3)
P 		1760.1
(2.5)
P 		932
B 1862.3
(-0)
P 		1572.8
(-0.9)
P 		871.4
(-3)
P 		1126.2
(-2.2)
P 		2868.9
(3)
P 		2076.8
(0.6)
P 		1998
C 2099.9
(2.1)
P 		1333.9
(-1.1)
P 		984.6
(-2.5)
P 		861.6
(-3)
P 		2321.5
(3)
P 		2320.8
(3)
P 		1460
avr 1658.4
(0.1) 		1520.2
(-0.5) 		919.2
(-3) 		1117.4
(-2.2) 		2341.2
(3) 		2052.6
(1.8) 		1422
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174653_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21813
Sequence Type Exemplar sequence
Representative Public ID CEK075F9R NCBI
Target Description CEK075F9R_rc /REP_DB=TREMBL Accession /GB=D71464 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk75f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075508 NCBI Caenorhabditis elegans Y113G7B.17 (Y113G7B.17) mRNA, complete cds. 11/11 A 
SNAP00000024718 ENSEMBL cdna:SNAP chromosome:CEL140:V:20265652:20267762:-1 11/11 None
GENEFINDER00000024726 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20265652:20267755:-1 11/11 None
Y113G7B.17.3 ENSEMBL cdna:known chromosome:CEL140:V:20265280:20267764:-1 gene:Y113G7B.17 11/11 None
Y113G7B.17.1 ENSEMBL cdna:known chromosome:CEL140:V:20265416:20267762:-1 gene:Y113G7B.17 11/11 A 
Y113G7B.17.2 ENSEMBL cdna:known chromosome:CEL140:V:20265416:20267764:-1 gene:Y113G7B.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20266690-20266985(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.17
Entrez Gene 180326 Entrez gene
SwissProt Q9U2X0 EMBL-EBI
WormBase CE23297 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17867_AT protein arginine N-methyltransferase, putative at
ATH1-121501:266687_AT protein arginine N-methyltransferase, putative at
CANINE:1585043_AT similar to heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 cfa
CANINE_2:CFA.1336.1.S1_AT similar to heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 cfa
CANINE_2:CFA.1336.1.S1_S_AT similar to heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 cfa
DROSOPHILA_2:1632383_AT Arginine methyltransferase 1 dm
DROSGENOME1:154448_AT Arginine methyltransferase 1 dm
HG-U133_PLUS_2:206445_S_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-U133A:206445_S_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-FOCUS:206445_S_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-U133A_2:206445_S_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HU35KSUBC:RC_W46810_S_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HUGENEFL:Y10807_S_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
U133_X3P:G4504496_3P_S_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
U133_X3P:HS2.397042.1.S1_3P_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-U133_PLUS_2:1565016_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-U95AV2:32825_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-U95D:81710_I_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-U95D:81713_R_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HG-U95C:60490_R_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
HU35KSUBB:RC_N47224_AT HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae) hs
MU11KSUBA:AA638408_G_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) mm
MU11KSUBA:AA638408_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) mm
MG-U74AV2:96696_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) mm
MOE430A:1452787_A_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) mm
MOUSE430A_2:1452787_A_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) mm
MOUSE430_2:1452787_A_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) mm
RG-U34A:U60882_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) rn
RAE230A:1386897_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) rn
RAT230_2:1386897_AT heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae) rn
YEAST_2:1777567_AT Nuclear SAM-dependent mono- and asymmetric arginine dimethylating methyltransferase that modifies hnRNPs, including Npl3p and Hrp1p, thus facilitating nuclear export of these proteins; required for viability of npl3 mutants Sc
Protein Similarities
Method ID Description E-Value
blast CAB54335 Hypothetical protein Y113G7B.17 [Caenorhabditis elegans] ref|NP_507909.1| Y113G7B.17 [Caenorhabditis elegans] 0.0
blast CAE67422 Hypothetical protein CBG12910 [Caenorhabditis briggsae] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:174653_S_AT
gaggatctcacgttcaaatcggactttaagctgagatgcactcgcagcgactatattcaa
gctttcgtcaccttcttcaccgtcgagttctccaagtgccacaagaaaaccggattctcg
actgggccagatgtacagtacactcattggaagcagaccgtcttttatcttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATCTCACGTTCAAATCGGACT 508 403 14 Antisense
CACGTTCAAATCGGACTTTAAGCTG 469 199 22 Antisense
AAGCTGAGATGCACTCGCAGCGACT 216 151 41 Antisense
GCACTCGCAGCGACTATATTCAAGC 478 315 51 Antisense
TATATTCAAGCTTTCGTCACCTTCT 360 661 65 Antisense
TCGAGTTCTCCAAGTGCCACAAGAA 414 603 96 Antisense
GCCACAAGAAAACCGGATTCTCGAC 216 277 111 Antisense
GGATTCTCGACTGGGCCAGATGTAC 308 509 125 Antisense
GGGCCAGATGTACAGTACACTCATT 366 491 137 Antisense
GTACACTCATTGGAAGCAGACCGTC 449 461 151 Antisense
GGAAGCAGACCGTCTTTTATCTTAA 183 531 162 Antisense
Sequence Source Affymetrix Proprietary Database