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[174652_at]

Description CEK029H2R_rc /REP_DB=TREMBL Accession /GB=D33361 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk29h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 86      6grp_total > 90      4grp_total > 05      6grp_highest_sub > 04      6grp_high1_sub > 04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 891.2
(3)
P 		793.3
(-0.2)
P 		706.9
(-3)
P 		890.4
(3)
P 		184
B 828.3
(-2.7)
P 		817.1
(-3)
P 		850.5
(-2)
P 		1027.5
(3)
P 		210
C 880.5
(0)
P 		792.8
(-3)
P 		862.2
(-0.6)
P 		966.5
(3)
P 		174
avr 866.7
(-0.5) 		801.1
(-3) 		806.5
(-2.8) 		961.5
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 626
1 2 3 4 5 6 range
A 1126.9
(0.6)
P 		940.1
(-2)
P 		919.2
(-2.3)
P 		976.6
(-1.5)
P 		1296
(3)
P 		869.4
(-3)
P 		427
B 795.3
(-2.1)
P 		1161
(1.4)
P 		701.8
(-3)
P 		1327.9
(3)
P 		932.7
(-0.8)
P 		1117.1
(1)
P 		626
C 871.2
(-1.8)
P 		1013.4
(0.2)
P 		993.1
(-0.1)
P 		1204.1
(3)
P 		792
(-3)
P 		1052.3
(0.8)
P 		412
avr 931.1
(-1.8) 		1038.2
(0.4) 		871.4
(-3) 		1169.5
(3) 		1006.9
(-0.3) 		1012.9
(-0.2) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 324.5
(3)
P 		172.2
(-1.7)
P 		184.8
(-1.3)
P 		130.3
(-3)
P 		194
B 264.1
(3)
P 		201.8
(-2.6)
P 		197.1
(-3)
P 		219
(-1)
P 		67
C 291.5
(2.6)
P 		227.9
(-0.2)
P 		300.5
(3)
P 		163
(-3)
P 		138
avr 293.4
(3) 		200.6
(-1.5) 		227.5
(-0.2) 		170.8
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 207.7
(-2.8)
P 		334.3
(1.2)
P 		200.2
(-3)
P 		247.7
(-1.5)
P 		391.1
(3)
P 		211.7
(-2.6)
P 		191
B 276.7
(-0.4)
P 		386.4
(2.3)
P 		170.4
(-3)
P 		351.7
(1.4)
P 		378.9
(2.1)
P 		416.6
(3)
P 		246
C 322.9
(1.4)
P 		309.2
(0.7)
P 		252.8
(-2.4)
P 		242.1
(-3)
P 		256.3
(-2.2)
P 		352.3
(3)
P 		110
avr 269.1
(-0.3) 		343.3
(3) 		207.8
(-3) 		280.5
(0.2) 		342.1
(2.9) 		326.9
(2.3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22387
Sequence Type Exemplar sequence
Representative Public ID CEK029H2R NCBI
Target Description CEK029H2R_rc /REP_DB=TREMBL Accession /GB=D33361 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk29h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F28B4.2 ENSEMBL cdna:known chromosome:CEL140:X:3210464:3220358:-1 gene:F28B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3210505-3210826(-) 100.0 100.0
Public Domain and Genome References
Ensembl F28B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83583 Hypothetical protein F28B4.2 [Caenorhabditis elegans] ref|NP_508550.1| F28B4.2 [Caenorhabditis elegans] 0.0
blast CAE68393 Hypothetical protein CBG14158 [Caenorhabditis briggsae] 0.0
blast XP_393803 PREDICTED: similar to ENSANGP00000026631 [Apis mellifera] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR000159 EMBL-EBI RA domain 1.9E-21
Pfam IPR001895 EMBL-EBI Guanine-nucleotide dissociation stimulator CDC25 2.6E-39
Pfam IPR000651 EMBL-EBI Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif 3.4E-13
Sequence
Target Sequence 
>C. ELEGANS:174652_AT
atgactgacccttttttatctttcttttctacgggtgtttcaagcaacaacaaaactatt
aagacgccatgtctctgctttctttatgcgcacatttttcataattatgtgttcttttct
ctgtgatttctatgtgctctttctggctccgagtctacaaattttatatgccttatttct
ttttgagttcaacccaattgctccatgttgatgattattacaattgaaaatgcaggtggt
gtcatgtcaatttacttaacccgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTGACCCTTTTTTATCTTTCT 314 45 36 Antisense
TTCTTTTCTACGGGTGTTTCAAGCA 218 691 57 Antisense
ATTAAGACGCCATGTCTCTGCTTTC 262 13 93 Antisense
TCTCTGCTTTCTTTATGCGCACATT 137 613 107 Antisense
AATTATGTGTTCTTTTCTCTGTGAT 65 177 138 Antisense
GTGATTTCTATGTGCTCTTTCTGGC 348 485 158 Antisense
TCTTTCTGGCTCCGAGTCTACAAAT 118 615 173 Antisense
ATATGCCTTATTTCTTTTTGAGTTC 217 21 201 Antisense
AACCCAATTGCTCCATGTTGATGAT 125 147 226 Antisense
GCAGGTGGTGTCATGTCAATTTACT 158 311 267 Antisense
ATGTCAATTTACTTAACCCGAATCA 420 47 279 Antisense
Sequence Source Affymetrix Proprietary Database