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[174651_s_at]

Description CEK016E7R_rc /REP_DB=TREMBL Accession /GB=D27268 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_high_8_8 > 59      6grp_highest_nonorm > 92      6grp_total > 68      4grp_total > 61      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 176.3
(3)
P 		149.3
(1)
P 		115
(-1.4)
P 		93.4
(-3)
M 		83
B 169.7
(2.1)
P 		181.3
(2.8)
P 		184.8
(3)
P 		88.3
(-3)
P 		97
C 243.2
(2.7)
P 		195.9
(1.1)
P 		253.8
(3)
P 		70.9
(-3)
P 		183
avr 196.4
(3) 		175.5
(1.9) 		184.5
(2.4) 		84.2
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 238.8
(-1.5)
P 		175.1
(-2.3)
P 		125
(-3)
P 		157.8
(-2.6)
P 		322.5
(-0.3)
P 		572
(3)
P 		447
B 177.7
(-2.8)
P 		166.2
(-2.9)
P 		159.5
(-3)
P 		163.4
(-3)
P 		274.9
(-1.7)
P 		705.1
(3)
P 		546
C 209.6
(-2.2)
P 		234.3
(-2)
P 		122.3
(-3)
P 		233.1
(-2)
P 		204.3
(-2.3)
P 		806.8
(3)
P 		685
avr 208.7
(-2.2) 		191.9
(-2.4) 		135.6
(-3) 		184.8
(-2.5) 		267.2
(-1.6) 		694.6
(3) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 64.2
(3)
P 		32.4
(-0.8)
P 		30.1
(-1.1)
P 		13.7
(-3)
M 		51
B 54.1
(3)
P 		44.8
(1.4)
P 		42.8
(1.1)
P 		18.8
(-3)
P 		35
C 80.5
(2.4)
P 		56.3
(0.5)
P 		88.5
(3)
P 		12
(-3)
P 		77
avr 66.3
(3) 		44.5
(0.5) 		53.8
(1.5) 		14.8
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 44
(-2.1)
P 		62.3
(-1.1)
P 		27.2
(-3)
P 		40
(-2.3)
P 		97.3
(0.8)
P 		139.3
(3)
P 		112
B 61.8
(-2.4)
P 		55.3
(-2.6)
P 		38.7
(-3)
P 		43.3
(-2.9)
P 		111.7
(-1)
P 		262.9
(3)
P 		224
C 77.7
(-1.8)
P 		71.5
(-2)
P 		31.1
(-3)
P 		46.9
(-2.6)
P 		66.1
(-2.1)
P 		270.1
(3)
P 		239
avr 61.2
(-2.1) 		63
(-2) 		32.3
(-3) 		43.4
(-2.7) 		91.7
(-1.1) 		224.1
(3) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174651_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20131
Sequence Type Exemplar sequence
Representative Public ID CEK016E7R NCBI
Target Description CEK016E7R_rc /REP_DB=TREMBL Accession /GB=D27268 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059457 NCBI Caenorhabditis elegans K06A5.4 (K06A5.4) mRNA, complete cds. 11/11 None
K06A5.4 ENSEMBL cdna:known chromosome:CEL140:I:6468568:6472398:1 gene:K06A5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044596 6/11 Cross Hyb Matching Probes None
GENEFINDER00000044612 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6471873-6472290(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A5.4
Entrez Gene 172350 Entrez gene
SwissProt O44548 EMBL-EBI
WormBase CE26645 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21435 Hypothetical protein K06A5.4 [Caenorhabditis elegans] ref|NP_491858.1| K06A5.4 [Caenorhabditis elegans] 0.0
blast T15087 hypothetical protein K06A5.4 - Caenorhabditis elegans 0.0
blast CAE67196 Hypothetical protein CBG12632 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:174651_S_AT
gttcagcacctttccatgatgcaagcgagacctagttccagactgaaaaagtcctcatct
atgaacgtatcgtggtaacaagaatacaagtatttcgttagaaaagggaactcagaaggc
gttgaaaattattaatcgtggaacaacaatacacgaagacgacgaaaatgaagacaatga
tgacgatgatgatatgcgtgaagaagacacatccatctactaatctctgtgcatggaatt
attctactgcacttattctttataactgtaaatgatgaatttttcctttttatactag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGCACCTTTCCATGATGCAAG 192 445 16 Antisense
GATGCAAGCGAGACCTAGTTCCAGA 258 413 33 Antisense
GCGAGACCTAGTTCCAGACTGAAAA 35 291 40 Antisense
GACTGAAAAAGTCCTCATCTATGAA 538 375 56 Antisense
GGAACAACAATACACGAAGACGACG 83 525 155 Antisense
GCGTGAAGAAGACACATCCATCTAC 640 291 211 Antisense
CATCCATCTACTAATCTCTGTGCAT 541 211 225 Antisense
ATCTCTGTGCATGGAATTATTCTAC 257 33 238 Antisense
ATTATTCTACTGCACTTATTCTTTA 551 13 253 Antisense
ACTGCACTTATTCTTTATAACTGTA 163 99 261 Antisense
GATGAATTTTTCCTTTTTATACTAG 621 407 289 Antisense
Sequence Source Affymetrix Proprietary Database