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[174650_at]

Description CEK094B9R_rc /REP_DB=TREMBL Accession /GB=D66242 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk94b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 47      6grp_highest_nonorm > 80      6grp_total > 10      4grp_total > 48      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 37.3
(-3)
P 		299.7
(0.5)
P 		483
(3)
P 		77.9
(-2.5)
A 		446
B 35.6
(-3)
P 		516.2
(3)
P 		504.7
(2.9)
P 		38.5
(-3)
M 		481
C 37.7
(-3)
P 		413.1
(1.9)
P 		500.7
(3)
P 		117
(-2)
P 		463
avr 36.9
(-3) 		409.7
(1.9) 		496.1
(3) 		77.8
(-2.5) 		459

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 83
(-3)
P 		266.9
(3)
P 		185.2
(0.3)
P 		229.9
(1.8)
P 		225.9
(1.7)
P 		83.8
(-3)
P 		184
B 128.3
(-1.9)
P 		392.6
(3)
P 		164.6
(-1.3)
P 		267.2
(0.7)
P 		185.1
(-0.9)
P 		72
(-3)
P 		321
C 93.4
(-3)
P 		292.9
(3)
P 		143.4
(-1.5)
P 		199
(0.2)
P 		237.4
(1.3)
P 		102.4
(-2.7)
P 		200
avr 101.6
(-2.6) 		317.5
(3) 		164.4
(-1) 		232
(0.8) 		216.1
(0.4) 		86.1
(-3) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 13.6
(-2.9)
P 		65.1
(-0.2)
P 		126.3
(3)
P 		11.4
(-3)
A 		115
B 11.4
(-2.8)
P 		127.5
(3)
P 		117
(2.5)
P 		8.2
(-3)
M 		119
C 12.5
(-3)
P 		118.8
(0.9)
P 		174.5
(3)
P 		19.7
(-2.7)
P 		162
avr 12.5
(-3) 		103.8
(1.3) 		139.3
(3) 		13.1
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 15.3
(-3)
P 		94.9
(3)
P 		40.3
(-1.1)
P 		58.3
(0.2)
P 		68.2
(1)
P 		20.4
(-2.6)
P 		80
B 44.6
(-2)
P 		130.7
(3)
P 		40
(-2.2)
P 		70.8
(-0.5)
P 		75.2
(-0.2)
P 		26.9
(-3)
P 		104
C 34.6
(-3)
P 		89.4
(3)
P 		36.5
(-2.8)
P 		40
(-2.4)
P 		76.8
(1.6)
P 		34.3
(-3)
P 		55
avr 31.5
(-2.7) 		105
(3) 		38.9
(-2.1) 		56.4
(-0.7) 		73.4
(0.6) 		27.2
(-3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22140
Sequence Type Exemplar sequence
Representative Public ID CEK094B9R NCBI
Target Description CEK094B9R_rc /REP_DB=TREMBL Accession /GB=D66242 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk94b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076585 NCBI Caenorhabditis elegans F49E10.2b (F49E10.2) mRNA, complete cds. 11/11 None
F49E10.2a ENSEMBL cdna:known chromosome:CEL140:X:5890364:5894715:1 gene:F49E10.2 11/11 None
F49E10.2b ENSEMBL cdna:known chromosome:CEL140:X:5890415:5894701:1 gene:F49E10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180855 2 1 NM_076585 174650_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5894377-5894667(+) 100.0 100.0
Public Domain and Genome References
Ensembl F49E10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL06020 Hypothetical protein F49E10.2b [Caenorhabditis elegans] ref|NP_508986.1| F49E10.2b [Caenorhabditis elegans] 0.0
blast AAC69106 Hypothetical protein F49E10.2a [Caenorhabditis elegans] ref|NP_508987.1| F49E10.2a [Caenorhabditis elegans] 0.0
blast CAE68816 Hypothetical protein CBG14773 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004294 EMBL-EBI Retinal pigment epithelial membrane protein 2.1E-6
Pfam IPR004294 EMBL-EBI Retinal pigment epithelial membrane protein 2.2E-9
Sequence
Target Sequence 
>C. ELEGANS:174650_AT
ttccatttcccttttttctgaagatgtttaaaaaccgagctcatcaaaacccctttcatg
gtcttgtatcttttttatccttttctccatttatttttgttatccatagtagggcgtatc
gtccaagaagagcaggtattatgctcttcattcatatttttcttacttcttactaaatct
ggtttgagcgaatgcatttttgtcgagaacatctcatcatcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCATTTCCCTTTTTTCTGAAGAT 330 699 36 Antisense
AGCTCATCAAAACCCCTTTCATGGT 527 79 73 Antisense
AAACCCCTTTCATGGTCTTGTATCT 682 125 82 Antisense
TCTTGTATCTTTTTTATCCTTTTCT 70 619 97 Antisense
TTTCTCCATTTATTTTTGTTATCCA 324 671 117 Antisense
TATCCATAGTAGGGCGTATCGTCCA 679 655 136 Antisense
GGGCGTATCGTCCAAGAAGAGCAGG 115 493 147 Antisense
GCAGGTATTATGCTCTTCATTCATA 470 311 167 Antisense
CTTACTTCTTACTAAATCTGGTTTG 132 187 197 Antisense
TGGTTTGAGCGAATGCATTTTTGTC 476 551 215 Antisense
TGTCGAGAACATCTCATCATCTTCT 609 557 236 Antisense
Sequence Source Affymetrix Proprietary Database