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[174649_s_at] beta transducin Trp-Asp domains

Description CEK047F2R_rc /REP_DB=TREMBL Accession /GB=D64220 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk47f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 89      4grp_highest_8_8 > 24      4grp_high_8_8 > 59      6grp_highest_nonorm > 90      6grp_total > 59      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 274.5
(2.8)
P 		191.6
(-0.1)
P 		281.5
(3)
P 		108.1
(-3)
P 		173
B 219.9
(2.4)
P 		230
(3)
P 		164.4
(-1)
P 		132
(-3)
P 		98
C 184.3
(-0.6)
P 		270.3
(3)
P 		257.8
(2.5)
P 		128.2
(-3)
P 		142
avr 226.2
(2.5) 		230.6
(2.8) 		234.6
(3) 		122.8
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 187.8
(-0.6)
P 		153.3
(-2.4)
P 		142.3
(-3)
P 		176.5
(-1.2)
P 		210.6
(0.7)
P 		253.9
(3)
P 		112
B 172.6
(1.1)
P 		159
(0.3)
P 		103.7
(-3)
P 		192.4
(2.3)
P 		204.1
(3)
P 		174.9
(1.3)
P 		100
C 229.4
(2.6)
P 		133.7
(-2.7)
P 		193
(0.6)
P 		129
(-3)
P 		178.1
(-0.3)
P 		236.9
(3)
P 		108
avr 196.6
(1) 		148.7
(-2.8) 		146.3
(-3) 		166
(-1.4) 		197.6
(1.1) 		221.9
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 99.9
(3)
P 		41.6
(-1.2)
P 		73.6
(1.1)
P 		15.8
(-3)
P 		84
B 70.1
(3)
P 		56.8
(1.1)
P 		38.1
(-1.6)
P 		28.1
(-3)
P 		42
C 61
(0.5)
P 		77.7
(1.9)
P 		89.9
(3)
P 		21.6
(-3)
P 		68
avr 77
(3) 		58.7
(1) 		67.2
(1.9) 		21.8
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 34.6
(-2.3)
P 		54.5
(1.3)
P 		31
(-3)
P 		44.8
(-0.5)
P 		63.5
(3)
P 		61.8
(2.7)
P 		33
B 60.1
(0.6)
P 		52.9
(-0.1)
P 		25.2
(-3)
P 		51
(-0.3)
P 		82.9
(3)
P 		65.2
(1.2)
P 		58
C 85
(3)
P 		40.8
(-1.5)
P 		49.1
(-0.7)
P 		26
(-3)
P 		57.6
(0.2)
P 		79.3
(2.4)
P 		59
avr 59.9
(1.4) 		49.4
(-0.5) 		35.1
(-3) 		40.6
(-2) 		68
(2.9) 		68.8
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174649_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20747
Sequence Type Exemplar sequence
Representative Public ID CEK047F2R NCBI
Target Description CEK047F2R_rc /REP_DB=TREMBL Accession /GB=D64220 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk47f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062855 NCBI Caenorhabditis elegans F13H8.2 (F13H8.2) mRNA, complete cds. 11/11 None
F13H8.2 ENSEMBL cdna:known chromosome:CEL140:II:6270320:6273933:1 gene:F13H8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6273400-6273920(+) 49.23 100.0
Public Domain and Genome References
Gene Title beta transducin Trp-Asp domains
Ensembl F13H8.2
Entrez Gene 174038 Entrez gene
SwissProt Q19433 EMBL-EBI
WormBase CE27127 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258166_AT transducin family protein / WD-40 repeat family protein at
CANINE_2:CFAAFFX.15597.1.S1_S_AT similar to WD-repeat protein 3 cfa
DROSOPHILA_2:1627104_AT dm
DROSGENOME1:151766_AT dm
CHICKEN:GGAAFFX.12349.1.S1_AT WD repeat domain 3 gga
CHICKEN:GGAAFFX.9396.1.S1_S_AT WD repeat domain 3 gga
CHICKEN:GGAAFFX.9396.3.S1_S_AT WD repeat domain 3 gga
HG-U133_PLUS_2:218882_S_AT WD repeat domain 3 hs
HG-U133A:218882_S_AT WD repeat domain 3 hs
HG-FOCUS:218882_S_AT WD repeat domain 3 hs
HG-U133A_2:218882_S_AT WD repeat domain 3 hs
HU35KSUBA:RC_AA258068_AT WD repeat domain 3 hs
U133_X3P:G5803220_3P_A_AT WD repeat domain 3 hs
HG-U95C:64096_AT WD repeat domain 3 hs
HG-U95E:79823_R_AT WD repeat domain 3 hs
MG-U74BV2:106609_AT WD repeat domain 3 mm
MOE430B:1433746_AT WD repeat domain 3 mm
MOUSE430_2:1433746_AT WD repeat domain 3 mm
MU19KSUBB:TC33799_AT WD repeat domain 3, mRNA (cDNA clone MGC:70140 IMAGE:6332749) mm
RG-U34B:RC_AA997374_AT WD repeat domain 3 (predicted) rn
RAE230A:1374793_AT WD repeat domain 3 (predicted) rn
RAT230_2:1374793_AT WD repeat domain 3 (predicted) rn
YEAST_2:1777632_AT Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex Sc
Protein Similarities
Method ID Description E-Value
blast AAK31492 Hypothetical protein F13H8.2 [Caenorhabditis elegans] ref|NP_495256.1| F13H8.2 [Caenorhabditis elegans] 0.0
blast T16064 hypothetical protein F13H8.2 - Caenorhabditis elegans 0.0
blast CAE59279 Hypothetical protein CBG02611 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007148 EMBL-EBI Dip2/Utp12 1.2E-104
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.5E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.8E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.14
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.7E-6
Sequence
Target Sequence 
>C. ELEGANS:174649_S_AT
acgacccaccaactcgagttgttctccacaactacgacgccttcaaatctatatctttct
tttcctttttgtttccttcgttagagttgtctcgttttttcactctttcaatttattctt
gttattgttacattctatattcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACCCACCAACTCGAGTTGTTCT 224 93 106 Antisense
ACCAACTCGAGTTGTTCTCCACAAC 474 83 113 Antisense
AGTTGTTCTCCACAACTACGACGCC 167 61 122 Antisense
CAACTACGACGCCTTCAAATCTATA 654 187 134 Antisense
GACGCCTTCAAATCTATATCTTTCT 553 381 141 Antisense
CAAATCTATATCTTTCTTTTCCTTT 683 193 149 Antisense
TTGTTTCCTTCGTTAGAGTTGTCTC 331 705 174 Antisense
TCCTTCGTTAGAGTTGTCTCGTTTT 132 591 179 Antisense
TCGTTTTTTCACTCTTTCAATTTAT 196 603 197 Antisense
CACTCTTTCAATTTATTCTTGTTAT 51 199 206 Antisense
GTTATTGTTACATTCTATATTCTTT 96 449 226 Antisense
Sequence Source Affymetrix Proprietary Database