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[174648_at] Drosophila protein X like

Description CEK018D2R_rc /REP_DB=TREMBL Accession /GB=D32535 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 770
1 2 3 4 range
A 1125.2
(3)
P 		549.5
(-1.5)
P 		355.1
(-3)
P 		451.9
(-2.2)
P 		770
B 904.8
(2.4)
P 		453
(-2.7)
P 		428.5
(-3)
P 		953.5
(3)
P 		525
C 889.4
(3)
P 		471.6
(-2.4)
P 		518.5
(-1.8)
P 		425.6
(-3)
P 		464
avr 973.1
(3) 		491.4
(-2.4) 		434
(-3) 		610.3
(-1) 		539

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 877
1 2 3 4 5 6 range
A 749.2
(2.9)
P 		755.2
(3)
P 		385.7
(-1.8)
P 		294
(-3)
P 		503.4
(-0.3)
P 		391
(-1.7)
P 		461
B 1171.4
(3)
P 		741
(-0.1)
P 		536.2
(-1.6)
P 		417.3
(-2.4)
P 		337.5
(-3)
P 		494.9
(-1.9)
P 		834
C 763.2
(3)
P 		577.9
(0.4)
P 		385.2
(-2.3)
P 		337.8
(-3)
P 		443
(-1.5)
P 		556.4
(0.1)
P 		425
avr 894.6
(3) 		691.4
(0.8) 		435.7
(-2.1) 		349.7
(-3) 		428
(-2.1) 		480.8
(-1.6) 		545
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 409.7
(3)
P 		119.3
(-2.1)
P 		92.8
(-2.5)
P 		66.2
(-3)
P 		344
B 288.5
(3)
P 		111.9
(-2.6)
P 		99.3
(-3)
P 		203.2
(0.3)
P 		189
C 294.4
(3)
P 		135.6
(-1.3)
P 		180.7
(-0.1)
P 		71.8
(-3)
P 		223
avr 330.9
(3) 		122.3
(-2.8) 		124.3
(-2.7) 		113.7
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 138.1
(-1)
P 		268.6
(3)
P 		84
(-2.7)
P 		74.6
(-3)
P 		151.9
(-0.6)
P 		95.2
(-2.4)
P 		194
B 407.6
(3)
P 		246.6
(-0.3)
P 		130.2
(-2.6)
P 		110.5
(-3)
P 		137.1
(-2.5)
P 		184.6
(-1.5)
P 		297
C 282.9
(3)
P 		176.3
(0)
P 		98
(-2.2)
P 		67.9
(-3)
P 		143.4
(-0.9)
P 		186.3
(0.3)
P 		215
avr 276.2
(3) 		230.5
(1.6) 		104.1
(-2.4) 		84.3
(-3) 		144.1
(-1.1) 		155.4
(-0.8) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22342
Sequence Type Exemplar sequence
Representative Public ID CEK018D2R NCBI
Target Description CEK018D2R_rc /REP_DB=TREMBL Accession /GB=D32535 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078030 NCBI Caenorhabditis elegans RaB Connectin related family member (rbc-1) (rbc-1) mRNA, complete cds. 11/11 None
F54E4.1 ENSEMBL cdna:known chromosome:CEL140:X:14610796:14624767:1 gene:F54E4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14624372-14624757(+) 100.0 100.0
Public Domain and Genome References
Gene Title Drosophila protein X like
Gene Symbol rbc-1
Ensembl F54E4.1
Entrez Gene 181558 Entrez gene
SwissProt Q93785 EMBL-EBI
WormBase CE11074 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587604_AT similar to Dmx-like 2 cfa
CANINE_2:CFA.1629.1.A1_AT similar to Dmx-like 2 cfa
CANINE_2:CFAAFFX.23737.1.S1_S_AT similar to Dmx-like 2 cfa
DROSOPHILA_2:1635652_AT dm
DROSGENOME1:143986_AT dm
HU35KSUBA:RC_C14891_AT Dmx-like 2 hs
U133_X3P:HS.272193.0.S1_3P_X_AT Dmx-like 2 hs
U133_X3P:HS.13264.0.S1_3P_AT Dmx-like 2 hs
U133_X3P:215761_3P_AT Dmx-like 2 hs
HG-U133A_2:212820_AT Dmx-like 2 hs
HG-U133_PLUS_2:212820_AT Dmx-like 2 hs
HG-U133A:212820_AT Dmx-like 2 hs
HG-U133A_2:215761_AT Dmx-like 2 hs
HG-U133_PLUS_2:215761_AT Dmx-like 2 hs
HG-U133A:215761_AT Dmx-like 2 hs
HG-U95AV2:41716_AT Dmx-like 2 hs
HG-U95B:42899_AT Dmx-like 2 hs
HU35KSUBC:RC_AA461311_AT Dmx-like 2 hs
Protein Similarities
Method ID Description E-Value
blast CAB01916 Hypothetical protein F54E4.1 [Caenorhabditis elegans] ref|NP_510431.1| RaB Connectin related family member (rbc-1) [Caenorhabditis elegans] 0.0
blast CAE63207 Hypothetical protein CBG07562 [Caenorhabditis briggsae] 0.0
blast AAT01618 Dmx-like 1 [Mus musculus] ref|XP_283496.3| PREDICTED: Dmx-like 1 [Mus musculus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.63
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.091
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0052
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Sequence
Target Sequence 
>C. ELEGANS:174648_AT
gccacattttaatttaattcgacttttttttaattcggaactatgtcacttaaaattatt
tttcccctccgctcccagccaatcaaacccagtttttcatgtttcaaatggttagtgtca
aagaaaatttacagatgatagatgattgtgagatttatttttttttacgctgtatgcaaa
tatttataatttccgagttgtgctttatttatttgaacaaaaatttctatgtctacgtag
tctatttccccccatccacttaggaccagccagtgcaattgtgaactataactagattcc
agtagaaaatgcatccgtgaacaacaacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACATTTTAATTTAATTCGACTT 189 279 19 Antisense
AATTCGGAACTATGTCACTTAAAAT 97 177 50 Antisense
CCAGCCAATCAAACCCAGTTTTTCA 334 273 93 Antisense
AACCCAGTTTTTCATGTTTCAAATG 520 137 104 Antisense
TTATTTTTTTTTACGCTGTATGCAA 345 679 173 Antisense
ATTTCCGAGTTGTGCTTTATTTATT 3 17 207 Antisense
TATGTCTACGTAGTCTATTTCCCCC 617 655 246 Antisense
CATCCACTTAGGACCAGCCAGTGCA 523 211 271 Antisense
GGACCAGCCAGTGCAATTGTGAACT 441 523 281 Antisense
GTGAACTATAACTAGATTCCAGTAG 588 479 299 Antisense
AATGCATCCGTGAACAACAACAACA 396 165 326 Antisense
Sequence Source Affymetrix Proprietary Database