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[174645_at]

Description CEK042A5R_rc /REP_DB=TREMBL Accession /GB=D34170 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk42a5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 10      4grp_high_8_8 > 44      6grp_highest_nonorm > 90      6grp_total > 32      4grp_total > 52      6grp_highest_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 181.3
(0.9)
P 		247.7
(3)
P 		174.3
(0.7)
P 		56.2
(-3)
A 		192
B 195.2
(2.7)
P 		201.8
(3)
P 		144.1
(0.5)
P 		61
(-3)
A 		141
C 174.1
(0.1)
P 		234.4
(3)
P 		157
(-0.7)
P 		107.8
(-3)
P 		127
avr 183.5
(1.3) 		228
(3) 		158.5
(0.3) 		75
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 159.7
(2.9)
P 		149.2
(1.7)
P 		152.7
(2.1)
P 		160.7
(3)
P 		144.2
(1.2)
P 		106.6
(-3)
P 		54
B 203.7
(3)
P 		152.3
(0.1)
P 		198
(2.7)
P 		190.9
(2.3)
P 		153.9
(0.2)
P 		97.4
(-3)
P 		106
C 139.1
(0.8)
P 		170.9
(3)
P 		155.2
(1.9)
P 		132.7
(0.3)
P 		122.2
(-0.4)
P 		84.6
(-3)
P 		86
avr 167.5
(2.9) 		157.5
(2.1) 		168.6
(3) 		161.4
(2.4) 		140.1
(0.6) 		96.2
(-3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 66
(3)
P 		53.8
(1.7)
P 		45.6
(0.9)
P 		8.2
(-3)
A 		58
B 62.2
(3)
P 		49.8
(1.5)
P 		33.4
(-0.5)
P 		13
(-3)
A 		49
C 57.6
(1.8)
P 		67.4
(3)
P 		54.7
(1.5)
P 		18.2
(-3)
P 		49
avr 61.9
(3) 		57
(2.4) 		44.6
(0.9) 		13.1
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 29.4
(-2.2)
P 		53.1
(3)
P 		33.3
(-1.4)
P 		40.8
(0.3)
P 		43.5
(0.9)
P 		26
(-3)
P 		27
B 70.9
(3)
P 		50.7
(-0.5)
P 		48.1
(-1)
P 		50.6
(-0.5)
P 		62.5
(1.5)
P 		36.3
(-3)
P 		35
C 51.5
(2.9)
P 		52.1
(3)
P 		39.5
(0)
P 		26.7
(-3)
P 		39.6
(0)
P 		28.3
(-2.6)
P 		25
avr 50.6
(2.6) 		52
(3) 		40.3
(-0.2) 		39.4
(-0.5) 		48.5
(2) 		30.2
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174645_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21111
Sequence Type Exemplar sequence
Representative Public ID CEK042A5R NCBI
Target Description CEK042A5R_rc /REP_DB=TREMBL Accession /GB=D34170 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk42a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065771 NCBI Caenorhabditis elegans R02F2.2 (R02F2.2) mRNA, complete cds. 11/11 A 
R02F2.2 ENSEMBL cdna:known chromosome:CEL140:III:5487478:5498899:1 gene:R02F2.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033077 7/11 Cross Hyb Matching Probes None
SNAP00000033072 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5497906-5498888(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F2.2
Entrez Gene 175756 Entrez gene
SwissProt Q21653 EMBL-EBI
WormBase CE31046 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5085 guanyl-nucleotide exchange factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL06044 Hypothetical protein R02F2.2 [Caenorhabditis elegans] ref|NP_498172.2| R02F2.2 [Caenorhabditis elegans] sp|Q21653|YNG2_CAEEL Hypothetical protein R02F2.2 in chromosome III precursor 0.0
blast T16657 hypothetical protein R02F2.3 - Caenorhabditis elegans 0.0
blast CAE61372 Hypothetical protein CBG05214 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 1.5E-34
Sequence
Target Sequence 
>C. ELEGANS:174645_AT
gacagttgctagatctcatctttggattggcacatctgctggatgtgtgctatcaacttc
tgtacaatctgcgagatctcaaccgacacccgatcttcgtgtctgcgaaatcggccacag
tggaccttgtcgaatccttctgccagttcatacaccgtctcactcaaaccatccttcaag
aaaacagaagcgaagttctttaaatgttccagcacaacaatcatcacagctaatgttggt
cagttgcggcgagggtctcgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTTGCTAGATCTCATCTTTGG 456 369 28 Antisense
CATCTTTGGATTGGCACATCTGCTG 207 213 44 Antisense
GGATGTGTGCTATCAACTTCTGTAC 373 515 68 Antisense
AATCTGCGAGATCTCAACCGACACC 517 169 93 Antisense
ACCCGATCTTCGTGTCTGCGAAATC 279 89 115 Antisense
GTCTGCGAAATCGGCCACAGTGGAC 450 471 128 Antisense
CAGTGGACCTTGTCGAATCCTTCTG 159 209 145 Antisense
TCTCACTCAAACCATCCTTCAAGAA 309 613 185 Antisense
GTTCCAGCACAACAATCATCACAGC 434 441 233 Antisense
ACAGCTAATGTTGGTCAGTTGCGGC 206 109 253 Antisense
TCAGTTGCGGCGAGGGTCTCGACGA 582 623 267 Antisense
Sequence Source Affymetrix Proprietary Database