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[174644_at]

Description CEK016A9R_rc /REP_DB=TREMBL Accession /GB=D27636 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16a9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 69      6grp_total > 94      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1963
1 2 3 4 range
A 2936.6
(3)
P 		974
(-3)
P 		1265.6
(-2.1)
P 		2079
(0.4)
P 		1963
B 2321.7
(3)
P 		1495.5
(-1.9)
P 		1314.8
(-3)
P 		2042.1
(1.3)
P 		1007
C 2727
(3)
P 		1590.2
(-2.3)
P 		1435.6
(-3)
P 		1807.5
(-1.3)
P 		1291
avr 2661.8
(3) 		1353.2
(-2.9) 		1338.7
(-3) 		1976.2
(-0.1) 		1323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2177
1 2 3 4 5 6 range
A 1903.5
(-1.3)
P 		1854
(-1.5)
P 		1310.4
(-3)
P 		2515.3
(0.4)
P 		3431.8
(3)
P 		2429.4
(0.2)
P 		2121
B 2244.2
(0.3)
P 		1784.2
(-1.2)
P 		1255.1
(-3)
P 		3044.6
(3)
P 		2762.3
(2.1)
P 		2661.4
(1.7)
P 		1790
C 1870.2
(-2.3)
P 		1680.6
(-3)
P 		1696.7
(-2.9)
P 		2037.5
(-1.6)
P 		3207.3
(3)
P 		2530
(0.3)
P 		1527
avr 2006
(-1) 		1772.9
(-1.8) 		1420.7
(-3) 		2532.5
(0.9) 		3133.8
(3) 		2540.3
(0.9) 		1713
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 858
1 2 3 4 range
A 1069.2
(3)
P 		211.4
(-3)
P 		330.8
(-2.2)
P 		304.3
(-2.4)
P 		858
B 740.4
(3)
P 		369.4
(-2.1)
P 		304.7
(-3)
P 		435.2
(-1.2)
P 		436
C 902.7
(3)
P 		457.2
(-1.5)
P 		500.4
(-1)
P 		304.8
(-3)
P 		598
avr 904.1
(3) 		346
(-3) 		378.6
(-2.6) 		348.1
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 837
1 2 3 4 5 6 range
A 350.9
(-2.5)
P 		659.4
(-0)
P 		285.4
(-3)
P 		637.9
(-0.2)
P 		1035.6
(3)
P 		591.5
(-0.6)
P 		750
B 780.9
(0.5)
P 		593.9
(-0.9)
P 		304.8
(-3)
P 		806.4
(0.7)
P 		1122.3
(3)
P 		992.4
(2)
P 		818
C 693.2
(-0.3)
P 		512.8
(-2)
P 		431.8
(-2.8)
P 		409.8
(-3)
P 		1037.8
(3)
P 		846.9
(1.2)
P 		628
avr 608.3
(-0.8) 		588.7
(-0.9) 		340.7
(-3) 		618
(-0.7) 		1065.2
(3) 		810.3
(0.9) 		725
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21362
Sequence Type Exemplar sequence
Representative Public ID CEK016A9R NCBI
Target Description CEK016A9R_rc /REP_DB=TREMBL Accession /GB=D27636 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069913 NCBI Caenorhabditis elegans F35G2.1a (F35G2.1) mRNA, complete cds. 11/11 None
F35G2.1a.1 ENSEMBL cdna:known chromosome:CEL140:IV:12203220:12207951:1 gene:F35G2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12207596-12207911(+) 100.0 100.0
Public Domain and Genome References
Ensembl F35G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93467 Hypothetical protein F35G2.1a [Caenorhabditis elegans] ref|NP_502314.1| F35G2.1a [Caenorhabditis elegans] 0.0
blast CAE62199 Hypothetical protein CBG06249 [Caenorhabditis briggsae] 0.0
blast CAE58895 Hypothetical protein CBG02142 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR006863 EMBL-EBI Erv1/Alr 2.6E-7
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 5.2E-11
Sequence
Target Sequence 
>C. ELEGANS:174644_AT
acatcacccatactatattcactttgtgcttcttcattctctcgttctgaccaacccata
ttttgccgtcgttccacttagaaaacacgttcctcgaatcaggaaaacatttttttcgtc
tgtctgtttgaatatttgggtatttttcttctctttttctcgattcatttctgcatattt
catcaacagctcgcgaatccaatcatcatcattttgttcgtcacaacagatcagatcacc
cacccattttattgtctctgcttccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCACCCATACTATATTCACTTT 667 105 13 Antisense
TATTCACTTTGTGCTTCTTCATTCT 498 663 28 Antisense
TTCTGACCAACCCATATTTTGCCGT 402 685 57 Antisense
TTGCCGTCGTTCCACTTAGAAAACA 77 703 75 Antisense
TAGAAAACACGTTCCTCGAATCAGG 234 651 91 Antisense
ACATTTTTTTCGTCTGTCTGTTTGA 560 105 119 Antisense
CTCTTTTTCTCGATTCATTTCTGCA 93 231 163 Antisense
TGCATATTTCATCAACAGCTCGCGA 330 579 184 Antisense
CTCGCGAATCCAATCATCATCATTT 626 233 202 Antisense
GTTCGTCACAACAGATCAGATCACC 432 441 228 Antisense
CCATTTTATTGTCTCTGCTTCCAAT 686 269 256 Antisense
Sequence Source Affymetrix Proprietary Database