[Home] | [Total List]

[174643_at]

Description CEK020B7R_rc /REP_DB=TREMBL Accession /GB=D32698 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20b7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 24      6grp_total > 02      4grp_total > 41      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 40.4
(-3)
A 		472.1
(2.8)
P 		488.3
(3)
P 		319.7
(0.7)
P 		448
B 67.4
(-3)
A 		440.3
(2.7)
P 		458.1
(3)
P 		233.3
(-0.5)
P 		391
C 45.4
(-3)
A 		433.9
(3)
P 		389
(2.3)
P 		233.2
(-0.1)
P 		389
avr 51.1
(-3) 		448.8
(3) 		445.1
(2.9) 		262.1
(0.2) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 361.5
(3)
P 		311.2
(1.6)
P 		147.7
(-3)
P 		201.1
(-1.5)
P 		329.6
(2.1)
P 		237.3
(-0.5)
P 		214
B 310.5
(1.1)
P 		389.8
(3)
P 		132.9
(-3)
A 		328.8
(1.6)
P 		246.9
(-0.3)
P 		220.4
(-1)
P 		257
C 217.2
(-2.4)
P 		409.6
(3)
P 		204.5
(-2.7)
A 		288.5
(-0.4)
P 		220.2
(-2.3)
P 		194.3
(-3)
P 		215
avr 296.4
(0.9) 		370.2
(3) 		161.7
(-3) 		272.8
(0.2) 		265.6
(-0) 		217.3
(-1.4) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 14.7
(-3)
A 		102.5
(1.7)
P 		127.6
(3)
P 		46.8
(-1.3)
P 		113
B 21.5
(-3)
A 		108.7
(3)
P 		106.1
(2.8)
P 		49.7
(-1.1)
P 		87
C 15
(-3)
A 		124.8
(2.5)
P 		135.6
(3)
P 		39.3
(-1.8)
P 		121
avr 17.1
(-3) 		112
(2.4) 		123.1
(3) 		45.3
(-1.4) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 66.6
(-0.4)
P 		110.7
(3)
P 		32.2
(-3)
P 		51
(-1.6)
P 		99.5
(2.1)
P 		57.8
(-1)
P 		79
B 108
(1.7)
P 		129.7
(3)
P 		32.3
(-3)
A 		87.1
(0.4)
P 		100.3
(1.2)
P 		82.2
(0.1)
P 		97
C 80.5
(-0.7)
P 		125
(3)
P 		52
(-3)
A 		58
(-2.5)
P 		71.3
(-1.4)
P 		65
(-1.9)
P 		73
avr 85
(0.3) 		121.8
(3) 		38.8
(-3) 		65.4
(-1.1) 		90.4
(0.7) 		68.3
(-0.9) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22139
Sequence Type Exemplar sequence
Representative Public ID CEK020B7R NCBI
Target Description CEK020B7R_rc /REP_DB=TREMBL Accession /GB=D32698 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C34E11.2 ENSEMBL cdna:known chromosome:CEL140:X:11805282:11811385:-1 gene:C34E11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11805307-11805651(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34E11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91752 Hypothetical protein C34E11.2 [Caenorhabditis elegans] ref|NP_509974.2| C34E11.2 [Caenorhabditis elegans] 0.0
blast CAE69422 Hypothetical protein CBG15588 [Caenorhabditis briggsae] 0.0
blast EAA04134 ENSANGP00000019058 [Anopheles gambiae str. PEST] ref|XP_308422.2| ENSANGP00000019058 [Anopheles gambiae str. PEST] 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:174643_AT
caacttttctgtgtcttcacttttcccgctttccttgtaatgtatcggtttttaacctta
tttaatataatagtaatgtaattaatgctatgatattttaattattgtaacaatggagat
gtatatgtcacttgtctattgctcaatcttttcatttcaatagccttttctgattctaca
ccactgtattacttaacaccatcacccgaatttctcttaaattttatatatcatccgcgt
acaattgtcatatgtgtacttttgctcccatgctcttctcttatatcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTTTTCTGTGTCTTCACTTTTC 139 189 13 Antisense
TCCCGCTTTCCTTGTAATGTATCGG 196 597 36 Antisense
ATGTCACTTGTCTATTGCTCAATCT 279 49 137 Antisense
ATCTTTTCATTTCAATAGCCTTTTC 662 29 158 Antisense
AATAGCCTTTTCTGATTCTACACCA 190 173 171 Antisense
CTGATTCTACACCACTGTATTACTT 154 239 182 Antisense
TGTATTACTTAACACCATCACCCGA 391 559 197 Antisense
ACCATCACCCGAATTTCTCTTAAAT 65 87 210 Antisense
TATATCATCCGCGTACAATTGTCAT 643 661 239 Antisense
CATATGTGTACTTTTGCTCCCATGC 68 215 261 Antisense
CCCATGCTCTTCTCTTATATCATTT 363 259 279 Antisense
Sequence Source Affymetrix Proprietary Database