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[174642_at]

Description CEK097E8R_rc /REP_DB=TREMBL Accession /GB=D72341 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97e8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 47      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 81      6grp_total > 37      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 259.8
(0.6)
P 		231.3
(-0.9)
P 		190.7
(-3)
P 		307.1
(3)
P 		116
B 222.4
(-0.9)
P 		161.6
(-2.9)
P 		158.8
(-3)
P 		342
(3)
P 		183
C 212.9
(1.7)
P 		109.1
(-2.4)
P 		94
(-3)
P 		247.4
(3)
P 		153
avr 231.7
(0.3) 		167.3
(-2.2) 		147.8
(-3) 		298.8
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 404.3
(3)
P 		256.2
(-0.5)
P 		151.6
(-3)
P 		166.5
(-2.6)
P 		163.6
(-2.7)
P 		303.1
(0.6)
P 		253
B 359.9
(3)
P 		287
(1)
P 		144.3
(-3)
P 		206.4
(-1.3)
P 		168.9
(-2.3)
P 		204.8
(-1.3)
P 		216
C 365.4
(1)
P 		323.9
(0.1)
P 		235.5
(-1.7)
P 		173
(-3)
P 		170.7
(-3)
P 		464.3
(3)
P 		294
avr 376.5
(3) 		289
(0.5) 		177.1
(-2.7) 		182
(-2.6) 		167.7
(-3) 		324.1
(1.5) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 94.6
(3)
P 		50.2
(-2.4)
P 		49.8
(-2.4)
P 		45
(-3)
P 		50
B 70.9
(2.7)
P 		39.9
(-2.5)
P 		36.8
(-3)
P 		72.9
(3)
P 		36
C 70.5
(3)
P 		31.4
(-3)
P 		32.8
(-2.8)
P 		41.7
(-1.4)
P 		39
avr 78.7
(3) 		40.5
(-2.9) 		39.8
(-3) 		53.2
(-0.9) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 74.5
(1.3)
P 		91.1
(3)
P 		33
(-3)
P 		42.2
(-2)
P 		49.4
(-1.3)
P 		73.8
(1.2)
P 		58
B 125.2
(3)
P 		95.5
(1)
P 		35.1
(-3)
P 		54.7
(-1.7)
P 		68.6
(-0.8)
P 		76.4
(-0.2)
P 		90
C 135.4
(2)
P 		98.8
(0.2)
P 		59.9
(-1.8)
P 		34.8
(-3)
P 		55.2
(-2)
P 		155.4
(3)
P 		121
avr 111.7
(3) 		95.1
(1.6) 		42.7
(-3) 		43.9
(-2.9) 		57.7
(-1.7) 		101.9
(2.1) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21161
Sequence Type Exemplar sequence
Representative Public ID CEK097E8R NCBI
Target Description CEK097E8R_rc /REP_DB=TREMBL Accession /GB=D72341 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk97e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39A1B.3 ENSEMBL cdna:known chromosome:CEL140:III:10763024:10777220:1 gene:Y39A1B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10776905-10777206(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y39A1B.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16340 Hypothetical protein Y39A1B.3 [Caenorhabditis elegans] ref|NP_499379.2| DumPY : shorter than wild-type family member (dpy-28) [Caenorhabditis elegans] 0.0
blast AAK81894 mutant dosage compensation protein; DPY-28 [Caenorhabditis elegans] 0.0
blast CAH65059 hypothetical protein [Gallus gallus] 3.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR007673 EMBL-EBI Non-SMC condensin subunit, XCAP-D2/Cnd1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174642_AT
actcaaaatgcccaagattttcaaaaaaaatttcccccccccccccccccatctcgaatt
ttcaaaaaatctcttccctccccaatctgattctcttgtatttctaaactattgcgatct
ctctctgtgttttttttcgagaaacttgtctctcaattgttcatttaatttgttgttctt
cttccccgtctcctcctgttccgggagaagaacttgtctcctgcgcctcctgaaagtact
gaaagtacccccacctgattctgagaattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCAAAATGCCCAAGATTTTCAAA 701 99 13 Antisense
CTCCCCAATCTGATTCTCTTGTATT 491 233 90 Antisense
GATTCTCTTGTATTTCTAAACTATT 75 431 101 Antisense
TCTAAACTATTGCGATCTCTCTCTG 159 613 115 Antisense
TTTTTTTCGAGAAACTTGTCTCTCA 247 675 143 Antisense
AACTTGTCTCTCAATTGTTCATTTA 87 139 155 Antisense
TCATTTAATTTGTTGTTCTTCTTCC 471 619 173 Antisense
GTCTCCTCCTGTTCCGGGAGAAGAA 194 469 200 Antisense
GGAGAAGAACTTGTCTCCTGCGCCT 679 515 216 Antisense
CTGCGCCTCCTGAAAGTACTGAAAG 372 237 233 Antisense
ACCCCCACCTGATTCTGAGAATTGC 652 89 259 Antisense
Sequence Source Affymetrix Proprietary Database