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[174641_at]

Description CEK016G2R_rc /REP_DB=TREMBL Accession /GB=D27657 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 74      6grp_total > 90      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 792
1 2 3 4 range
A 453.1
(-3)
P 		942.7
(2.1)
P 		1024.9
(3)
P 		614.8
(-1.3)
P 		572
B 473.4
(-3)
P 		1048.9
(2.9)
P 		1056.9
(3)
P 		813.4
(0.5)
P 		584
C 521.2
(-2.2)
P 		1081.9
(2)
P 		1207.6
(3)
P 		415.3
(-3)
P 		792
avr 482.6
(-3) 		1024.5
(2.3) 		1096.5
(3) 		614.5
(-1.7) 		614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 653
(-0.9)
P 		783.8
(1.7)
P 		544.8
(-3)
P 		769.7
(1.4)
P 		851.1
(3)
P 		603.6
(-1.8)
P 		306
B 578.1
(-3)
P 		661.3
(-1.2)
P 		693.7
(-0.5)
P 		855
(3)
P 		601.4
(-2.5)
P 		716.9
(0)
P 		277
C 583.4
(-2.3)
P 		658.6
(-1.2)
P 		538.8
(-3)
P 		933.4
(3)
P 		622.2
(-1.7)
P 		868.2
(2)
P 		395
avr 604.8
(-2.7) 		701.2
(-0.5) 		592.4
(-3) 		852.7
(3) 		691.6
(-0.7) 		729.6
(0.2) 		260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 165
(-0.5)
P 		204.6
(0.9)
P 		267.9
(3)
P 		90
(-3)
P 		178
B 151
(-3)
P 		259.1
(3)
P 		244.9
(2.2)
P 		173.3
(-1.8)
P 		108
C 172.5
(-1.2)
P 		311.1
(1.1)
P 		420.9
(3)
P 		70
(-3)
P 		351
avr 162.8
(-1.4) 		258.3
(1.4) 		311.2
(3) 		111.1
(-3) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 120.4
(-2.9)
P 		278.7
(3)
P 		118.6
(-3)
P 		195.2
(-0.1)
P 		256.8
(2.2)
P 		147
(-1.9)
P 		160
B 201.1
(-1)
P 		220.1
(0.1)
P 		168.5
(-3)
P 		226.5
(0.5)
P 		244.3
(1.6)
P 		267.3
(3)
P 		99
C 216.2
(0.1)
P 		201
(-0.5)
P 		137.1
(-3)
P 		187.7
(-1)
P 		201.3
(-0.5)
P 		290.6
(3)
P 		154
avr 179.2
(-0.6) 		233.3
(2.9) 		141.4
(-3) 		203.1
(1) 		234.1
(2.9) 		235
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22102
Sequence Type Exemplar sequence
Representative Public ID CEK016G2R NCBI
Target Description CEK016G2R_rc /REP_DB=TREMBL Accession /GB=D27657 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077506 NCBI Caenorhabditis elegans F08B12.1 (F08B12.1) mRNA, complete cds. 11/11 None
F08B12.1 ENSEMBL cdna:known chromosome:CEL140:X:11385039:11392703:1 gene:F08B12.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001953 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11391910-11392675(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08B12.1
Entrez Gene 181330 Entrez gene
SwissProt Q19188 EMBL-EBI
WormBase CE03162 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23488.1.S1_S_AT similar to Prominin 1 precursor (Prominin-like protein 1) (Antigen AC133) (CD133 antigen) cfa
DROSOPHILA_2:1641333_S_AT dm
DROSGENOME1:154220_AT dm
CHICKEN:GGAAFFX.11899.1.S1_AT prominin 1 gga
CHICKEN:GGAAFFX.9212.1.S1_S_AT prominin 1 gga
CHICKEN:GGAAFFX.9212.6.S1_S_AT prominin 1 gga
HG-FOCUS:204304_S_AT prominin 1 hs
HG-U133_PLUS_2:204304_S_AT prominin 1 hs
HG-U133A:204304_S_AT prominin 1 hs
HG-U133A_2:204304_S_AT prominin 1 hs
HU35KSUBB:RC_R40057_AT prominin 1 hs
U133_X3P:G5174386_3P_A_AT prominin 1 hs
HG-U95AV2:41470_AT prominin 1 hs
HG-U95D:71478_AT Prominin 1 hs
MG-U74AV2:93389_AT prominin 1 mm
MG-U74AV2:93390_G_AT prominin 1 mm
MOUSE430_2:1419700_A_AT prominin 1 mm
MOE430A:1419700_A_AT prominin 1 mm
MOUSE430A_2:1419700_A_AT prominin 1 mm
MU11KSUBA:AF026269_AT prominin 1 mm
RAE230A:1368008_AT prominin 1 rn
RAT230_2:1368008_AT prominin 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92112 Hypothetical protein F08B12.1 [Caenorhabditis elegans] ref|NP_509907.1| F08B12.1 [Caenorhabditis elegans] 0.0
blast CAE70647 Hypothetical protein CBG17350 [Caenorhabditis briggsae] 0.0
blast AAS19709 prominin 1 isoform s7 [Homo sapiens] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR008795 EMBL-EBI Prominin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509907.1 6 5-22,102-124,152-174,432-454,475-497,792-814
F08B12.1 6 5-22,102-124,152-174,432-454,475-497,792-814
Sequence
Target Sequence 
>C. ELEGANS:174641_AT
gtattatcacaattgcgcctacttaattaaaaaatgcatgtatttatgtcgacaattcag
ttgaaattttctttcatttcatttgatcgcacctagaatctacgagtatcattttcccat
tattcatttctcccagtcccatgttctttttcttaaaatctactcaagtgaaccgctcaa
ttctacgcacacagtttttctattcagtgccatttttgcatttccgttttttcctcaaat
tcgatcttcagttgtttgactttttttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTATCACAATTGCGCCTACTTA 476 453 112 Antisense
CTTTCATTTCATTTGATCGCACCTA 365 221 182 Antisense
GAGTATCATTTTCCCATTATTCATT 392 399 215 Antisense
TCCCATGTTCTTTTTCTTAAAATCT 177 599 248 Antisense
AAATCTACTCAAGTGAACCGCTCAA 597 117 267 Antisense
AAGTGAACCGCTCAATTCTACGCAC 439 157 277 Antisense
AATTCTACGCACACAGTTTTTCTAT 689 175 290 Antisense
ACAGTTTTTCTATTCAGTGCCATTT 212 107 302 Antisense
AGTGCCATTTTTGCATTTCCGTTTT 301 61 317 Antisense
TTCCTCAAATTCGATCTTCAGTTGT 607 699 342 Antisense
CTTCAGTTGTTTGACTTTTTTTCAG 202 221 357 Antisense
Sequence Source Affymetrix Proprietary Database