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[174640_at]

Description CEK041H4R_rc /REP_DB=TREMBL Accession /GB=D34161 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41h4 : 3prime end, single read.
Cluster 6grp_total > 11      4grp_total > 12      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 36.3
(-1.5)
A 		32.9
(-1.6)
A 		4.7
(-3)
A 		130
(3)
P 		125
B 41.3
(1.6)
A 		44.3
(2)
M 		4.1
(-3)
A 		52.2
(3)
A 		48
C 57.6
(-1.5)
A 		9.2
(-3)
A 		19.9
(-2.7)
A 		202.2
(3)
P 		193
avr 45.1
(-1.2) 		28.8
(-2) 		9.6
(-3) 		128.1
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 3.5
(-3)
A 		8.1
(-2.3)
A 		44.7
(3)
A 		11.9
(-1.8)
A 		38.6
(2.1)
A 		6.4
(-2.6)
A 		41
B 60.1
(3)
A 		32.9
(-0.3)
A 		26
(-1.2)
A 		27
(-1)
A 		49.8
(1.7)
A 		10.9
(-3)
A 		49
C 2.7
(-3)
A 		80.3
(3)
A 		39.7
(-0.1)
A 		6.8
(-2.7)
A 		11.6
(-2.3)
A 		44.7
(0.2)
A 		78
avr 22.1
(-1.4) 		40.4
(3) 		36.8
(2.1) 		15.2
(-3) 		33.3
(1.3) 		20.7
(-1.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 13.2
(1)
A 		7.1
(-1)
A 		1.2
(-3)
A 		19
(3)
P 		18
B 13.2
(3)
A 		10.9
(1.9)
M 		0.9
(-3)
A 		11.1
(2)
A 		12
C 19.1
(0.1)
A 		2.6
(-3)
A 		6.9
(-2.2)
A 		34.1
(3)
P 		32
avr 15.2
(1) 		6.9
(-1.7) 		3
(-3) 		21.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.9
(-1.7)
A 		9.7
(2)
A 		3
(-1.7)
A 		11.6
(3)
A 		1.6
(-2.5)
A 		11
B 20.9
(3)
A 		11
(-0.5)
A 		6.3
(-2.2)
A 		7.2
(-1.9)
A 		20.2
(2.8)
A 		4.1
(-3)
A 		17
C 1
(-3)
A 		24.5
(3)
A 		10.1
(-0.7)
A 		1.4
(-2.9)
A 		3.8
(-2.3)
A 		15
(0.6)
A 		24
avr 7.5
(-0.6) 		12.8
(3) 		8.7
(0.2) 		3.9
(-3) 		11.9
(2.4) 		6.9
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21674
Sequence Type Exemplar sequence
Representative Public ID CEK041H4R NCBI
Target Description CEK041H4R_rc /REP_DB=TREMBL Accession /GB=D34161 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK041H4R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK041H4R CEK041H4R_rc /REP_DB=TREMBL Accession /GB=D34161 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41h4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029031 10/11 Negative Strand Matching Probes None
NM_001029033 10/11 Negative Strand Matching Probes None
NM_001029032 10/11 Negative Strand Matching Probes None
W06H8.8e 10/11 Negative Strand Matching Probes A 
W06H8.8g 10/11 Negative Strand Matching Probes A 
W06H8.8f 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6158342-6158705(+) 73.28 100.0
Sequence
Target Sequence 
>C. ELEGANS:174640_AT
gaatctcagagtaatcttcaatgaaagaacccgagtcacgaacatctagaagaattgtgc
atttgtccacaccataatcattcttcgcttcaaacacaagttttccaccatccaatttac
gaatatcattgatggtgacattaaatgaatgttccgaacccttggtaaacccttcaaacg
ccattttgtcaaaattagcaaccgggaagtcgtttcgatacattcggatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTCAGAGTAATCTTCAATGAA 166 329 29 Antisense
GAACCCGAGTCACGAACATCTAGAA 150 347 55 Antisense
AGAATTGTGCATTTGTCCACACCAT 526 75 79 Antisense
TGTCCACACCATAATCATTCTTCGC 544 557 92 Antisense
TAATCATTCTTCGCTTCAAACACAA 563 635 103 Antisense
TCAAACACAAGTTTTCCACCATCCA 223 629 118 Antisense
GTTTTCCACCATCCAATTTACGAAT 128 447 128 Antisense
TAAATGAATGTTCCGAACCCTTGGT 537 639 170 Antisense
CCTTCAAACGCCATTTTGTCAAAAT 211 267 199 Antisense
TTAGCAACCGGGAAGTCGTTTCGAT 617 545 223 Antisense
GTCGTTTCGATACATTCGGATCTGA 116 473 237 Antisense
Sequence Source Affymetrix Proprietary Database