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[174637_at]

Description CEK068A1R_rc /REP_DB=TREMBL Accession /GB=D65734 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk68a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 47      6grp_total > 27      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13042
1 2 3 4 range
A 5436.2
(-0.8)
P 		1388.2
(-3)
P 		1764.4
(-2.8)
P 		12189.7
(3)
P 		10802
B 5207.5
(-0.3)
P 		1724.5
(-3)
P 		2793.7
(-2.2)
P 		9504.1
(3)
P 		7780
C 4039.9
(-2.2)
P 		2325.3
(-3)
P 		2881.5
(-2.7)
P 		14429.7
(3)
P 		12104
avr 4894.5
(-1.2) 		1812.7
(-3) 		2479.9
(-2.6) 		12041.2
(3) 		10229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4560
1 2 3 4 5 6 range
A 6154.6
(3)
P 		3536
(-1)
P 		3303.2
(-1.3)
P 		2197.3
(-3)
P 		3405.3
(-1.2)
P 		2630.5
(-2.3)
P 		3957
B 3063
(0.6)
P 		4069.1
(3)
P 		1594.8
(-3)
P 		3788.2
(2.3)
P 		3247.1
(1)
P 		4048.5
(3)
P 		2474
C 5241.9
(3)
P 		3450.4
(-0.5)
P 		2725.2
(-1.9)
P 		2131.1
(-3)
P 		2686.7
(-1.9)
P 		4147.6
(0.9)
P 		3111
avr 4819.8
(3) 		3685.2
(0) 		2541.1
(-3) 		2705.5
(-2.6) 		3113
(-1.5) 		3608.9
(-0.2) 		2279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2132
1 2 3 4 range
A 1979.3
(3)
P 		301.3
(-3)
P 		461.3
(-2.4)
P 		1784.3
(2.3)
P 		1678
B 1660.6
(1.6)
P 		425.9
(-3)
P 		647.4
(-2.2)
P 		2025.3
(3)
P 		1599
C 1337.3
(-0.7)
P 		668.5
(-3)
P 		1004.3
(-1.9)
P 		2433.1
(3)
P 		1765
avr 1659.1
(1.4) 		465.2
(-3) 		704.3
(-2.1) 		2080.9
(3) 		1616

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1556
1 2 3 4 5 6 range
A 1134.6
(1.9)
P 		1257.6
(3)
P 		719.4
(-1.6)
P 		557.3
(-3)
P 		1027.6
(1)
P 		640.4
(-2.3)
P 		700
B 1065.8
(0.6)
P 		1354.4
(2.2)
P 		387.3
(-3)
P 		1003.4
(0.3)
P 		1319.2
(2)
P 		1509.7
(3)
P 		1122
C 1942.9
(3)
P 		1052.8
(-0.5)
P 		693.6
(-2)
P 		428.6
(-3)
P 		869.4
(-1.3)
P 		1388.5
(0.8)
P 		1514
avr 1381.1
(3) 		1221.6
(1.8) 		600.1
(-3) 		663.1
(-2.5) 		1072.1
(0.6) 		1179.5
(1.5) 		781
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21107
Sequence Type Exemplar sequence
Representative Public ID CEK068A1R NCBI
Target Description CEK068A1R_rc /REP_DB=TREMBL Accession /GB=D65734 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk68a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027445 NCBI Caenorhabditis elegans yeast Glc Seven-like Phosphatases family member (gsp-2) (gsp-2) mRNA, complete cds. 11/11 None
F56C9.1.1 ENSEMBL cdna:known chromosome:CEL140:III:7336508:7343568:1 gene:F56C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7338319-7338918(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gsp-2
Ensembl F56C9.1
Entrez Gene 3564807 Entrez gene
SwissProt P48727 EMBL-EBI
WormBase CE01319 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20314_S_AT serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) at
ATH1-121501:254923_AT serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) at
CANINE:1582493_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
CANINE_2:CFAAFFX.18039.1.S1_S_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
CANINE_2:CFA.3471.1.S1_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
DROSOPHILA_2:1625806_AT Protein phosphatase 1 at 96A dm
DROSGENOME1:143310_AT Protein phosphatase 1 at 96A dm
HG-U133_PLUS_2:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U133A:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-FOCUS:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U133A_2:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
U133_X3P:G4506002_3P_A_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U95AV2:32157_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U95D:74577_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
MOUSE430_2:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MOE430A:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MOUSE430A_2:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBA:AA218341_S_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.3454.0_F_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.10308.0_F_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MG-U74CV2:134841_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MG-U74BV2:165128_R_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.29209.0_S_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBB:TC31824_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBC:TC36035_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBC:TC39781_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
RG-U34A:S78215_S_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RG-U34C:RC_AA817897_S_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RAE230A:1386863_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RAT230_2:1386863_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
YEAST_2:1777225_AT Catalytic subunit of type 1 serine/threonine protein phosphatase, involved in many processes including glycogen metabolism, sporulation, and mitosis; interacts with multiple regulatory subunits; predominantly isolated with Sds22p Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18957 Yeast glc seven-like phosphatases protein 2 [Caenorhabditis elegans] ref|NP_001022616.1| yeast Glc Seven-like Phosphatases family member (gsp-2) [Caenorhabditis elegans] sp|P48727|YMEX_CAEEL Putative serine/threonine protein phosphatase F56C9.1 in chromosome III 0.0
blast CAE57617 Hypothetical protein CBG00598 [Caenorhabditis briggsae] 0.0
blast AAH70008 Zgc:85729 [Danio rerio] ref|XP_697867.1| PREDICTED: similar to protein phosphatase 1, catalytic subunit, alpha [Danio rerio] ref|NP_999976.1| hypothetical protein LOC407980 [Danio rerio] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.7E-44
Sequence
Target Sequence 
>C. ELEGANS:174637_AT
aagctttcgttgtcaacatcccttcctctttatctctgtggaccatttagagctaatgac
tcctcaccaattgctggctcaatttttcatcaaaacaatccccattttattcgtttttaa
attccaaattttaattttttttgctaaacttatctcttaaaacagtatcaaattttactt
ctctaaatggtctaaatatttaaaacaaatgtttatgatgtcaatcaatctccactcctt
tccttcctccattcattcgtccatcccgtactcttcgtttctcaattttatattgttaaa
acccccatttgtcgatttaattcattaaagttttccgaacaaataaaatagaacactggt
acaagcgtgtaagcaatatttcttattacaacgagtgcaacgtctccaaggagagcgtgc
gagacgaacagacatcccccacgactagtgctcctcgagccgtctcatcgatttctgtcg
tttgtcagttattcagaaatgctccgccccggctcttcagtaagctataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTTTCGTTGTCAACATCCCTTC 437 149 19 Antisense
TTCCTCTTTATCTCTGTGGACCATT 62 699 41 Antisense
TTAGAGCTAATGACTCCTCACCAAT 634 681 65 Antisense
TCCTCACCAATTGCTGGCTCAATTT 477 591 79 Antisense
ATGATGTCAATCAATCTCCACTCCT 76 47 233 Antisense
GTACTCTTCGTTTCTCAATTTTATA 476 459 286 Antisense
ACCCCCATTTGTCGATTTAATTCAT 518 87 319 Antisense
ACAACGAGTGCAACGTCTCCAAGGA 66 113 406 Antisense
AGCGTGCGAGACGAACAGACATCCC 72 83 432 Antisense
CCGTCTCATCGATTTCTGTCGTTTG 409 265 478 Antisense
CCCCGGCTCTTCAGTAAGCTATAAT 352 261 525 Antisense
Sequence Source Affymetrix Proprietary Database