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[174636_at]

Description CEK005AYR_rc /REP_DB=TREMBL Accession /GB=D27848 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk5a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 36      4grp_high_8_8 > 09      6grp_highest_nonorm > 60      6grp_total > 36      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 759
1 2 3 4 range
A 577.7
(3)
P 		113.2
(-2.3)
P 		53.6
(-3)
P 		406
(1)
P 		524
B 590.4
(3)
P 		65.7
(-2.7)
P 		39.2
(-3)
M 		485
(1.9)
P 		551
C 798.1
(3)
P 		87.5
(-2.6)
P 		42.5
(-3)
A 		795
(3)
P 		756
avr 655.4
(3) 		88.8
(-2.6) 		45.1
(-3) 		562
(2.1) 		610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 480.6
(2.5)
P 		511.7
(3)
P 		218.6
(-2)
P 		241.9
(-1.6)
P 		158.5
(-3)
P 		348.7
(0.2)
P 		353
B 523.9
(3)
P 		309.2
(-0.3)
P 		309.8
(-0.3)
P 		272.1
(-0.8)
P 		130.8
(-3)
P 		501.5
(2.7)
P 		393
C 620.1
(3)
P 		411.5
(0.2)
P 		362.5
(-0.4)
P 		256
(-1.8)
P 		165.7
(-3)
P 		366.6
(-0.3)
P 		454
avr 541.5
(3) 		410.8
(1) 		297
(-0.8) 		256.7
(-1.4) 		151.7
(-3) 		405.6
(0.9) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 210.3
(3)
P 		24.6
(-2.7)
P 		14
(-3)
P 		59.4
(-1.6)
P 		196
B 188.3
(3)
P 		16.2
(-2.8)
P 		9.1
(-3)
M 		103.4
(0.2)
P 		179
C 264.2
(3)
P 		25.2
(-2.7)
P 		14.8
(-3)
A 		134
(-0.1)
P 		249
avr 220.9
(3) 		22
(-2.7) 		12.6
(-3) 		98.9
(-0.5) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 88.6
(-1.2)
P 		182
(3)
P 		47.6
(-3)
P 		61.4
(-2.4)
P 		47.8
(-3)
P 		84.9
(-1.3)
P 		134
B 182.3
(2.8)
P 		102.9
(-0.8)
P 		75.2
(-2)
P 		72.1
(-2.1)
P 		53.1
(-3)
P 		187
(3)
P 		134
C 229.9
(3)
P 		125.6
(-0.5)
P 		92.3
(-1.6)
P 		51.5
(-3)
P 		53.6
(-2.9)
P 		122.7
(-0.6)
P 		178
avr 166.9
(3) 		136.8
(1.4) 		71.7
(-1.9) 		61.7
(-2.5) 		51.5
(-3) 		131.5
(1.2) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22354
Sequence Type Exemplar sequence
Representative Public ID CEK005AYR NCBI
Target Description CEK005AYR_rc /REP_DB=TREMBL Accession /GB=D27848 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk5a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK005AYR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK005AYR CEK005AYR_rc /REP_DB=TREMBL Accession /GB=D27848 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk5a11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16943348-16943760(+) 86.84 98.56
Sequence
Target Sequence 
>C. ELEGANS:174636_AT
ttctgacacatggaggaatcctggtggtcggtgaactgtcgtacttgcaccgaacttgcc
aggctcgcctctcagtttgaaaaaactcaaaaagttttagacaatttttgtgaaatattc
aaaaaataaacttcttttaaaatttttaagacatagtaaaatttaggcattttgctcatt
ttaaatcttaaattgcaattttaattttttaataaatcattatgttacaaaataataaaa
aaattccaaatactttttgctgatcttttttaatcgtattcaaataacaaattttgtgaa
aaaatattaatttcatagaaattttgctaacatttttgcagacaattttggcaccaaatt
tggaaacgttatttcgacatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGACACATGGAGGAATCCTGGT 156 693 14 Antisense
GAATCCTGGTGGTCGGTGAACTGTC 84 331 29 Antisense
GGTCGGTGAACTGTCGTACTTGCAC 328 503 39 Antisense
AACTGTCGTACTTGCACCGAACTTG 344 141 47 Antisense
AAATTTAGGCATTTTGCTCATTTTA 648 115 172 Antisense
AATTCCAAATACTTTTTGCTGATCT 126 177 255 Antisense
ATACTTTTTGCTGATCTTTTTTAAT 6 23 263 Antisense
TTGCTGATCTTTTTTAATCGTATTC 300 703 270 Antisense
GAAATTTTGCTAACATTTTTGCAGA 682 363 331 Antisense
TTTTTGCAGACAATTTTGGCACCAA 123 675 346 Antisense
TTTGGAAACGTTATTTCGACATCGT 415 1 372 Antisense
Sequence Source Affymetrix Proprietary Database