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[174635_s_at] killer toxin-resistance protein (S. cerevisiae)

Description CEK016E9R_rc /REP_DB=TREMBL Accession /GB=D27649 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 31      6grp_total > 24      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 915
1 2 3 4 range
A 1171.2
(1.7)
P 		1063.1
(0.8)
P 		1331.7
(3)
P 		599
(-3)
P 		733
B 1366.7
(3)
P 		1168.3
(1.5)
P 		1357.3
(2.9)
P 		590.7
(-3)
P 		776
C 1157.9
(1.2)
P 		1135.3
(1)
P 		1440.1
(3)
P 		524.8
(-3)
P 		915
avr 1231.9
(1.9) 		1122.2
(1.1) 		1376.4
(3) 		571.5
(-3) 		805

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 757
1 2 3 4 5 6 range
A 1154.4
(3)
P 		1113.3
(2.4)
P 		1012.8
(1)
P 		818.4
(-1.8)
P 		778.7
(-2.3)
P 		732.5
(-3)
P 		422
B 1354.8
(3)
P 		1345.6
(2.9)
P 		1279.6
(2.3)
P 		1078.7
(0.6)
P 		673.2
(-3)
P 		858.8
(-1.4)
P 		682
C 1083.7
(0.6)
P 		1386.3
(3)
P 		1076
(0.5)
P 		1014.5
(0.1)
P 		629.8
(-3)
P 		888.2
(-1)
P 		757
avr 1197.6
(2.1) 		1281.7
(3) 		1122.8
(1.4) 		970.5
(-0.2) 		693.9
(-3) 		826.5
(-1.6) 		588
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 414
1 2 3 4 range
A 426.4
(3)
P 		230.8
(-0.5)
P 		348.1
(1.6)
P 		87.7
(-3)
P 		339
B 435.8
(3)
P 		288.5
(0.1)
P 		314.5
(0.7)
P 		125.9
(-3)
P 		310
C 383.3
(1.3)
P 		326.4
(0.5)
P 		501.9
(3)
P 		88.5
(-3)
P 		413
avr 415.2
(3) 		281.9
(0.5) 		388.2
(2.5) 		100.7
(-3) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 212.8
(-2)
P 		395.9
(3)
P 		220.6
(-1.8)
P 		207.6
(-2.2)
P 		235
(-1.4)
P 		178.3
(-3)
P 		218
B 471.4
(3)
P 		447.9
(2.3)
P 		310.7
(-1.9)
P 		285.7
(-2.6)
P 		273.5
(-3)
P 		320.2
(-1.6)
P 		198
C 401.7
(2.4)
P 		423
(3)
P 		273.8
(-1.1)
P 		204
(-3)
P 		203.8
(-3)
P 		297.3
(-0.4)
P 		219
avr 362
(1.1) 		422.3
(3) 		268.4
(-1.9) 		232.4
(-3) 		237.4
(-2.8) 		265.3
(-2) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174635_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22228
Sequence Type Exemplar sequence
Representative Public ID CEK016E9R NCBI
Target Description CEK016E9R_rc /REP_DB=TREMBL Accession /GB=D27649 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076867 NCBI Caenorhabditis elegans F48E3.3 (F48E3.3) mRNA, complete cds. 11/11 A 
SNAP00000040272 ENSEMBL cdna:SNAP chromosome:CEL140:X:7495874:7500921:-1 11/11 None
GENEFINDER00000040278 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7495874:7502528:-1 11/11 None
F48E3.3 ENSEMBL cdna:known chromosome:CEL140:X:7495629:7500921:-1 gene:F48E3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7495648-7496176(-) 100.0 100.0
Public Domain and Genome References
Gene Title killer toxin-resistance protein (S. cerevisiae)
Ensembl F48E3.3
Entrez Gene 181007 Entrez gene
SwissProt Q9GPA0 EMBL-EBI
WormBase CE02751 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259936_AT UDP-glucose:glycoprotein glucosyltransferase, putative at
CANINE_2:CFA.1618.1.S1_AT similar to UDP-glucose ceramide glucosyltransferase-like 1 isoform 1 cfa
CANINE_2:CFAAFFX.7325.1.S1_S_AT similar to UDP-glucose ceramide glucosyltransferase-like 1 isoform 1 cfa
DROSOPHILA_2:1624465_AT UDP-glucose-glycoprotein glucosyltransferase dm
DROSGENOME1:152454_AT UDP-glucose-glycoprotein glucosyltransferase dm
CHICKEN:GGA.19243.1.S1_AT UDP-glucose ceramide glucosyltransferase-like 1 gga
HG-U133_PLUS_2:222569_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133B:222569_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133_PLUS_2:218257_S_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133A:218257_S_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-FOCUS:218257_S_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133A_2:218257_S_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HU35KSUBB:RC_AA088854_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HU35KSUBB:RC_R98442_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
U133_X3P:G9910279_3P_A_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
U133_X3P:HS.105794.0.S3_3P_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
U133_X3P:HS.105794.0.S2_3P_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133_PLUS_2:222568_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133B:222568_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U95B:41970_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U95C:52538_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U95E:81335_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U95E:87956_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U95E:89751_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133_PLUS_2:244814_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U133B:244814_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U95C:52476_R_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HG-U95C:60215_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HU35KSUBA:AA278413_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
HU35KSUBB:RC_H66736_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
U133_X3P:HS.87070.0.A1_3P_AT UDP-glucose ceramide glucosyltransferase-like 1 hs
MOUSE430_2:1448009_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MOE430A:1448009_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MOUSE430A_2:1448009_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MOUSE430_2:1432318_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MOE430B:1432318_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MU11KSUBB:W98049_S_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MG-U74AV2:102941_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MG-U74BV2:113921_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MOE430B:1455839_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MOUSE430_2:1455839_AT UDP-glucose ceramide glucosyltransferase-like 1 mm
MG-U74BV2:115325_AT UDP-glucose ceramide glucosyltransferase-like 1, mRNA (cDNA clone MGC:61018 IMAGE:30022247) mm
MG-U74BV2:117094_AT UDP-glucose ceramide glucosyltransferase-like 1, mRNA (cDNA clone MGC:61018 IMAGE:30022247) mm
MU19KSUBA:TC24863_AT UDP-glucose ceramide glucosyltransferase-like 1, mRNA (cDNA clone MGC:61018 IMAGE:30022247) mm
MU19KSUBB:TC31263_AT UDP-glucose ceramide glucosyltransferase-like 1, mRNA (cDNA clone MGC:61018 IMAGE:30022247) mm
MU19KSUBC:TC36667_AT UDP-glucose ceramide glucosyltransferase-like 1, mRNA (cDNA clone MGC:61018 IMAGE:30022247) mm
RAE230A:1368953_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RAT230_2:1368953_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RAE230A:1372471_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RAT230_2:1372471_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RAE230A:1389218_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RAT230_2:1389218_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RAE230B:1396984_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RAT230_2:1396984_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RG-U34B:RC_AA996442_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
RG-U34C:RC_AI169490_AT UDP-glucose ceramide glucosyltransferase-like 1 rn
Protein Similarities
Method ID Description E-Value
blast AAF99954 Hypothetical protein F48E3.3 [Caenorhabditis elegans] ref|NP_509268.1| F48E3.3 [Caenorhabditis elegans] 0.0
blast CAE70223 Hypothetical protein CBG16703 [Caenorhabditis briggsae] 0.0
blast XP_594485 PREDICTED: similar to UDP-glucose:glycoprotein glucosyltransferase 1 precursor (UDP-glucose ceramide glucosyltransferase-like 1) (UDP--Glc:glycoprotein glucosyltransferase) (HUGT1) isoform 1 [Bos taurus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009448 EMBL-EBI UDP-glucose:Glycoprotein Glucosyltransferase 1.0E-126
Pfam IPR009448 EMBL-EBI UDP-glucose:Glycoprotein Glucosyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040278 7 7-26,41-60,81-101,111-133,138-160,170-192,275-297
Sequence
Target Sequence 
>C. ELEGANS:174635_S_AT
tttggtgtgagacttggtgcgatgatggaagcaagaagaatgcaaagactattgacttaa
cccgctcacaaaagagccaaagctcgactcagccgccagaattattggagaatggaaaac
gtatgatgacgaaatccgggaagtcatttctggacattcttctgataacccttcggataa
tgtcatttctgaaaatgatgactctcacacggaactttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGTGTGAGACTTGGTGCGATGA 557 665 13 Antisense
GAGACTTGGTGCGATGATGGAAGCA 232 393 21 Antisense
AACCCGCTCACAAAAGAGCCAAAGC 568 143 71 Antisense
AAAGAGCCAAAGCTCGACTCAGCCG 414 123 83 Antisense
CTCGACTCAGCCGCCAGAATTATTG 429 233 95 Antisense
ACGTATGATGACGAAATCCGGGAAG 128 93 131 Antisense
ATCCGGGAAGTCATTTCTGGACATT 104 39 146 Antisense
CTGGACATTCTTCTGATAACCCTTC 503 239 162 Antisense
CATTCTTCTGATAACCCTTCGGATA 139 217 167 Antisense
AACCCTTCGGATAATGTCATTTCTG 50 147 179 Antisense
TGATGACTCTCACACGGAACTTTAA 188 565 208 Antisense
Sequence Source Affymetrix Proprietary Database