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[174632_at]

Description CEK027G3R_rc /REP_DB=TREMBL Accession /GB=D33215 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 76      6grp_total > 39      4grp_total > 13      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1932
1 2 3 4 range
A 1777.5
(-0.3)
P 		1462.4
(-1.4)
P 		949
(-3)
P 		2817.4
(3)
P 		1868
B 1729.5
(-0.3)
P 		1266.4
(-1.9)
P 		975.3
(-3)
P 		2624
(3)
P 		1649
C 1725.3
(0.5)
P 		1012.3
(-2.5)
P 		885.7
(-3)
P 		2308.3
(3)
P 		1423
avr 1744.1
(-0.1) 		1247
(-1.9) 		936.7
(-3) 		2583.2
(3) 		1647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 743
1 2 3 4 5 6 range
A 1452.4
(3)
P 		1160.8
(0.6)
P 		709.7
(-3)
P 		871.4
(-1.7)
P 		1356.6
(2.2)
P 		1136.6
(0.4)
P 		743
B 1228.8
(3)
P 		1047.7
(0.8)
P 		728.3
(-3)
P 		1117.5
(1.7)
P 		1117.6
(1.7)
P 		1079.1
(1.2)
P 		501
C 1108
(0.1)
P 		1018.1
(-0.8)
P 		873.6
(-2.3)
P 		808.5
(-3)
P 		1392.1
(3)
P 		1006
(-1)
P 		584
avr 1263.1
(2.7) 		1075.5
(0.5) 		770.5
(-3) 		932.5
(-1.1) 		1288.8
(3) 		1073.9
(0.5) 		518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 647.2
(3)
P 		317.5
(-2)
P 		248.1
(-3)
P 		412.4
(-0.5)
P 		399
B 551.5
(2.9)
P 		312.8
(-1.4)
P 		226
(-3)
P 		559.2
(3)
P 		333
C 571.1
(3)
P 		291
(-3)
P 		308.7
(-2.6)
P 		389.2
(-0.9)
P 		280
avr 589.9
(3) 		307.1
(-2.2) 		260.9
(-3) 		453.6
(0.5) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 267.7
(-0.4)
P 		412.8
(3)
P 		154.6
(-3)
P 		221
(-1.5)
P 		409.4
(2.9)
P 		276.7
(-0.2)
P 		258
B 427.6
(2.4)
P 		348.7
(0.7)
P 		176.9
(-3)
P 		296
(-0.4)
P 		454.1
(3)
P 		402.4
(1.9)
P 		277
C 410.7
(2.2)
P 		310.6
(0.1)
P 		222.4
(-1.8)
P 		162.6
(-3)
P 		450.5
(3)
P 		336.8
(0.6)
P 		288
avr 368.7
(1.4) 		357.4
(1.1) 		184.6
(-3) 		226.5
(-2) 		438
(3) 		338.6
(0.6) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22289
Sequence Type Exemplar sequence
Representative Public ID CEK027G3R NCBI
Target Description CEK027G3R_rc /REP_DB=TREMBL Accession /GB=D33215 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078417 NCBI Caenorhabditis elegans F10D7.5a (F10D7.5) mRNA, complete cds. 11/11 None
F10D7.5a ENSEMBL cdna:known chromosome:CEL140:X:17383048:17391473:-1 gene:F10D7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181767 4 1 NM_078417 174632_at (11), 193199_at (11)
NM_078418 193199_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17383057-17383420(-) 92.29 100.0
Public Domain and Genome References
Ensembl F10D7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS80344 Hypothetical protein F10D7.5a [Caenorhabditis elegans] ref|NP_510818.3| F10D7.5a [Caenorhabditis elegans] 0.0
blast T16028 hypothetical protein F10D7.5 - Caenorhabditis elegans 0.0
blast AAS80346 Hypothetical protein F10D7.5c [Caenorhabditis elegans] ref|NP_510819.3| F10D7.5c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006573 EMBL-EBI NEUZ 7.5E-51
Pfam IPR006573 EMBL-EBI NEUZ 3.3E-51
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.1E-7
Sequence
Target Sequence 
>C. ELEGANS:174632_AT
tttatattgtcattcactattaccaaaagtggtttcacccagttagctgcataatatatc
cacgttgaattgaatcatagccctttgcccttttcccccaatcccatgaattttaccccc
attttcacaaaacctactgattcgagaacatgcaccggtcctcccacacacaaactatcg
ccttggtcctactgctcccaactgtctttatgtgtattcaacctttgtagttgcctctta
tacatccgttccttttgtgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATATTGTCATTCACTATTACCA 536 673 64 Antisense
AAAGTGGTTTCACCCAGTTAGCTGC 63 123 89 Antisense
GTTAGCTGCATAATATATCCACGTT 41 447 105 Antisense
AATTGAATCATAGCCCTTTGCCCTT 340 179 131 Antisense
CATGAATTTTACCCCCATTTTCACA 241 211 168 Antisense
ACTGATTCGAGAACATGCACCGGTC 347 97 199 Antisense
TCCCACACACAAACTATCGCCTTGG 258 599 225 Antisense
TGCTCCCAACTGTCTTTATGTGTAT 526 581 256 Antisense
GTATTCAACCTTTGTAGTTGCCTCT 540 451 277 Antisense
TGTAGTTGCCTCTTATACATCCGTT 566 559 289 Antisense
TATACATCCGTTCCTTTTGTGTTGT 668 659 302 Antisense
Sequence Source Affymetrix Proprietary Database