[Home] | [Total List]

[174631_at]

Description CEK043E5R_rc /REP_DB=TREMBL Accession /GB=D34269 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 99      6grp_total > 78      4grp_total > 06      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 771.9
(0.5)
P 		454.9
(-3)
P 		490.9
(-2.6)
P 		996.7
(3)
P 		542
B 608.4
(2.3)
P 		443.5
(-3)
P 		515.9
(-0.7)
P 		631.2
(3)
P 		188
C 638.6
(1.4)
P 		331.9
(-3)
P 		684.8
(2.1)
P 		746.4
(3)
P 		415
avr 673
(1.1) 		410.1
(-3) 		563.9
(-0.6) 		791.4
(3) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2118
1 2 3 4 5 6 range
A 900.5
(-2)
P 		761.7
(-2.4)
P 		569.3
(-3)
P 		734.9
(-2.5)
P 		1632
(0.2)
P 		2554.3
(3)
P 		1985
B 721.7
(-2.1)
P 		558.7
(-2.6)
P 		436.6
(-3)
P 		849.7
(-1.8)
P 		1134.7
(-0.9)
P 		2433.9
(3)
P 		1997
C 553
(-3)
P 		709.4
(-2.4)
P 		695.9
(-2.4)
P 		875
(-1.7)
P 		926.1
(-1.5)
P 		2037.4
(3)
P 		1484
avr 725.1
(-2.5) 		676.6
(-2.6) 		567.3
(-3) 		819.9
(-2.1) 		1230.9
(-0.8) 		2341.9
(3) 		1775
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 281.1
(3)
P 		98.7
(-3)
P 		128.3
(-2)
P 		145.9
(-1.4)
P 		182
B 194
(3)
P 		109.5
(-3)
P 		119.5
(-2.3)
P 		134.5
(-1.2)
P 		85
C 211.4
(1.9)
P 		95.4
(-3)
P 		238.7
(3)
P 		125.9
(-1.7)
P 		143
avr 228.8
(3) 		101.2
(-3) 		162.2
(-0.1) 		135.4
(-1.4) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 802
1 2 3 4 5 6 range
A 166
(-2.5)
P 		270.9
(-1.2)
P 		124
(-3)
P 		186.4
(-2.2)
P 		492.5
(1.4)
P 		621.9
(3)
P 		498
B 251.1
(-1.9)
P 		186
(-2.4)
P 		106
(-3)
P 		225.1
(-2.1)
P 		461
(-0.3)
P 		907.6
(3)
P 		802
C 205
(-2.7)
P 		216.5
(-2.5)
P 		177.1
(-3)
P 		176
(-3)
P 		299.7
(-1.5)
P 		682
(3)
P 		506
avr 207.4
(-2.3) 		224.5
(-2.1) 		135.7
(-3) 		195.8
(-2.4) 		417.7
(-0.2) 		737.2
(3) 		602
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21595
Sequence Type Exemplar sequence
Representative Public ID CEK043E5R NCBI
Target Description CEK043E5R_rc /REP_DB=TREMBL Accession /GB=D34269 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067525 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-18) (daf-18) mRNA, complete cds. 11/11 A 
T07A9.6 ENSEMBL cdna:known chromosome:CEL140:IV:420013:425173:-1 gene:T07A9.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:420045-420625(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol daf-18
Ensembl T07A9.6
Entrez Gene 176869 Entrez gene
SwissProt O44405 EMBL-EBI
WormBase CE26385 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39284 Abnormal dauer formation protein 18 [Caenorhabditis elegans] ref|NP_499926.1| abnormal DAuer Formation family member (daf-18) [Caenorhabditis elegans] emb|CAA10315.1| DAF-18 protein [Caenorhabditis elegans] gb|AAD21620.1| PTEN phosphatidylinositol 3' phosphatase homolog DAF-18 [Caenorhabditis elegans] gb|AAD03420.1| DAF-18 [Caenorhabditis elegans] 0.0
blast T32574 hypothetical protein T07A9.6 - Caenorhabditis elegans 0.0
blast CAE67940 Hypothetical protein CBG13540 [Caenorhabditis briggsae] 1.0E-178
Sequence
Target Sequence 
>C. ELEGANS:174631_AT
gaagattttcttcttactgaccctccaattttcagataatttcaatgttttaagttttct
cttcaaagtatcattcactttctgtatagtgttttgttttttaacaaactattgttcgat
tattttgtatattcatattatagctctcaacttcccgattttccacgtatatatgtatat
tttgccgggtgaaaaatagcaattccctatgaatgtatccccttccatctgttttcttac
tcagaaattgtaattcacattgcgggtcatcactaatcctatgggctttaacacaattct
cccataaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATTTTCTTCTTACTGACCCTC 15 337 175 Antisense
TTACTGACCCTCCAATTTTCAGATA 465 683 188 Antisense
GTTTTCTCTTCAAAGTATCATTCAC 275 449 228 Antisense
ATATTATAGCTCTCAACTTCCCGAT 111 19 309 Antisense
ACTTCCCGATTTTCCACGTATATAT 466 103 324 Antisense
ATATATGTATATTTTGCCGGGTGAA 592 19 343 Antisense
AATTCCCTATGAATGTATCCCCTTC 654 177 375 Antisense
CCTTCCATCTGTTTTCTTACTCAGA 642 269 395 Antisense
GTAATTCACATTGCGGGTCATCACT 42 463 424 Antisense
GGTCATCACTAATCCTATGGGCTTT 370 503 439 Antisense
GGCTTTAACACAATTCTCCCATAAA 105 537 458 Antisense
Sequence Source Affymetrix Proprietary Database