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[174630_at]

Description CEK025H1R_rc /REP_DB=TREMBL Accession /GB=D33073 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 02      6grp_total > 38      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5370
1 2 3 4 range
A 3271.8
(-0.3)
P 		1131.6
(-2.8)
P 		955.1
(-3)
P 		6133.6
(3)
P 		5179
B 3296.6
(-0.2)
P 		1087.1
(-2.6)
P 		763.9
(-3)
P 		6112.2
(3)
P 		5348
C 3012.9
(-0.4)
P 		1165.8
(-2.7)
P 		878.1
(-3)
P 		5827.7
(3)
P 		4950
avr 3193.8
(-0.3) 		1128.2
(-2.7) 		865.7
(-3) 		6024.5
(3) 		5159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2279
1 2 3 4 5 6 range
A 3438
(3)
P 		2366
(0.2)
P 		1320.4
(-2.6)
P 		1158.7
(-3)
P 		2242.6
(-0.1)
P 		2244.8
(-0.1)
P 		2279
B 3368.6
(3)
P 		2862.2
(1.3)
P 		1565.6
(-3)
P 		1550.7
(-3)
P 		1941.9
(-1.7)
P 		2540.2
(0.3)
P 		1818
C 2808.6
(3)
P 		2654.6
(2.4)
P 		1424.2
(-2.8)
P 		1364.7
(-3)
P 		1911.4
(-0.7)
P 		2611.6
(2.2)
P 		1444
avr 3205.1
(3) 		2627.6
(1.1) 		1436.7
(-2.7) 		1358
(-3) 		2032
(-0.8) 		2465.5
(0.6) 		1847
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1126
1 2 3 4 range
A 1191.3
(3)
P 		245.6
(-3)
P 		249.7
(-3)
P 		897.8
(1.1)
P 		946
B 1051.3
(1.7)
P 		268.5
(-2.5)
P 		177
(-3)
P 		1302.5
(3)
P 		1126
C 997.4
(3)
P 		335.2
(-2.7)
P 		306
(-3)
P 		982.6
(2.9)
P 		691
avr 1080
(3) 		283.1
(-2.7) 		244.2
(-3) 		1061
(2.9) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 898
1 2 3 4 5 6 range
A 633.8
(0.8)
P 		841.5
(3)
P 		287.6
(-3)
P 		293.9
(-2.9)
P 		676.7
(1.2)
P 		546.5
(-0.2)
P 		554
B 1172.1
(3)
P 		952.7
(1.3)
P 		380.2
(-3)
P 		410.7
(-2.8)
P 		789
(0.1)
P 		947.2
(1.3)
P 		792
C 1041
(3)
P 		810
(1.2)
P 		362.5
(-2.3)
P 		274.4
(-3)
P 		618.5
(-0.3)
P 		874.3
(1.7)
P 		767
avr 949
(3) 		868.1
(2.2) 		343.4
(-2.8) 		326.3
(-3) 		694.7
(0.5) 		789.3
(1.5) 		623
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21900
Sequence Type Exemplar sequence
Representative Public ID CEK025H1R NCBI
Target Description CEK025H1R_rc /REP_DB=TREMBL Accession /GB=D33073 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073334 NCBI Caenorhabditis elegans T28B11.1 (T28B11.1) mRNA, complete cds. 11/11 None
T28B11.1.1 ENSEMBL cdna:known chromosome:CEL140:V:10714747:10717833:-1 gene:T28B11.1 11/11 A 
T28B11.1.2 ENSEMBL cdna:known chromosome:CEL140:V:10714749:10735007:-1 gene:T28B11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10714776-10715122(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28B11.1
Entrez Gene 179487 Entrez gene
SwissProt Q22842 EMBL-EBI
WormBase CE14335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98290 Hypothetical protein T28B11.1 [Caenorhabditis elegans] ref|NP_505735.1| T28B11.1 [Caenorhabditis elegans] 0.0
blast CAE64874 Hypothetical protein CBG09680 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-8
Sequence
Target Sequence 
>C. ELEGANS:174630_AT
tttaatcgaactttctccctcaatattcccttttggtacggtcgttctgaattctgtaac
ggagaggcctgccatgctcaaatttccccatttccctttcaaaattcctcatcccggtca
ttgtctttttatccgcaccccaccagttccacaaccgtttgtctgtcttttgctcatatc
cgttcctctcgccccgtcccaagtaaatcttaacgaaagcattatacccactgatgatgt
tgctatcggcctttttattatttcttctcgcaattctaatgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAATCGAACTTTCTCCCTCAATA 647 671 35 Antisense
TCCCTCAATATTCCCTTTTGGTACG 550 589 50 Antisense
GGTACGGTCGTTCTGAATTCTGTAA 220 467 69 Antisense
TAACGGAGAGGCCTGCCATGCTCAA 267 637 91 Antisense
CATTTCCCTTTCAAAATTCCTCATC 322 215 123 Antisense
CATCCCGGTCATTGTCTTTTTATCC 127 211 144 Antisense
CGGTCATTGTCTTTTTATCCGCACC 469 243 149 Antisense
TAACGAAAGCATTATACCCACTGAT 324 639 245 Antisense
CCCACTGATGATGTTGCTATCGGCC 284 259 261 Antisense
GCTATCGGCCTTTTTATTATTTCTT 314 303 276 Antisense
ATTTCTTCTCGCAATTCTAATGCTG 102 17 294 Antisense
Sequence Source Affymetrix Proprietary Database