[Home] | [Total List]

[174629_at]

Description CEK024B4R_rc /REP_DB=TREMBL Accession /GB=D32961 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk24b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 10      6grp_total > 03      4grp_total > 63      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1539
1 2 3 4 range
A 2158.6
(3)
P 		752.3
(-2.8)
P 		1384.8
(-0.2)
P 		702.8
(-3)
P 		1456
B 2241.5
(3)
P 		1229.9
(-1.2)
P 		1147.2
(-1.6)
P 		804.4
(-3)
P 		1437
C 1672.8
(3)
P 		1428.7
(1.5)
P 		1637.7
(2.8)
P 		711.4
(-3)
P 		961
avr 2024.3
(3) 		1137
(-1.1) 		1389.9
(0) 		739.5
(-3) 		1285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1377
1 2 3 4 5 6 range
A 2048.4
(3)
P 		1877.8
(2.2)
P 		830.9
(-2.5)
P 		1049.1
(-1.5)
P 		1290
(-0.4)
P 		722.6
(-3)
P 		1326
B 1906.6
(1.9)
P 		2099.5
(3)
P 		1369
(-1)
P 		1276.3
(-1.5)
P 		1127.8
(-2.4)
P 		1011.3
(-3)
P 		1088
C 1884.2
(2.9)
P 		1899.4
(3)
P 		1253.4
(-0.5)
P 		1033
(-1.7)
P 		1103.2
(-1.3)
P 		799.9
(-3)
P 		1100
avr 1946.4
(2.9) 		1958.9
(3) 		1151.1
(-1.3) 		1119.5
(-1.5) 		1173.7
(-1.2) 		844.6
(-3) 		1114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 683
1 2 3 4 range
A 785.9
(3)
P 		163.3
(-2.5)
P 		362
(-0.7)
P 		102.9
(-3)
P 		683
B 714.8
(3)
P 		303.8
(-1.5)
P 		265.8
(-2)
P 		171.4
(-3)
P 		543
C 553.8
(2.8)
P 		410.8
(0.9)
P 		570.8
(3)
P 		120
(-3)
P 		451
avr 684.8
(3) 		292.6
(-1.3) 		399.5
(-0.1) 		131.4
(-3) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 377.6
(-0.5)
P 		667.8
(3)
P 		181
(-2.9)
P 		266.1
(-1.9)
P 		389.3
(-0.4)
P 		175.9
(-3)
P 		492
B 663.4
(2.4)
P 		698.8
(3)
P 		332.4
(-3)
P 		338.1
(-2.9)
P 		458.2
(-0.9)
P 		377.1
(-2.3)
P 		366
C 698.4
(3)
P 		579.6
(1.5)
P 		319
(-1.6)
P 		207.7
(-3)
P 		357
(-1.2)
P 		267.8
(-2.3)
P 		491
avr 579.8
(1.9) 		648.7
(3) 		277.5
(-2.9) 		270.6
(-3) 		401.5
(-0.9) 		273.6
(-3) 		378
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21675
Sequence Type Exemplar sequence
Representative Public ID CEK024B4R NCBI
Target Description CEK024B4R_rc /REP_DB=TREMBL Accession /GB=D32961 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk24b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072245 NCBI Caenorhabditis elegans UNCoordinated family member (unc-83) (unc-83) mRNA, complete cds. 11/11 A 
W01A11.3 ENSEMBL cdna:known chromosome:CEL140:V:6467659:6490474:1 gene:W01A11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6490101-6490458(+) 95.52 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-83
Ensembl W01A11.3
Entrez Gene 179033 Entrez gene
SwissProt Q23064 EMBL-EBI
WormBase CE31077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04966 Uncoordinated protein 83 [Caenorhabditis elegans] ref|NP_504646.2| UNCoordinated family member (unc-83) [Caenorhabditis elegans] gb|AAL15621.1| UNC-83 [Caenorhabditis elegans] sp|Q23064|UNC83_CAEEL Nuclear migration protein unc-83 (Uncoordinated protein 83) 0.0
blast T29644 hypothetical protein W01A11.3 - Caenorhabditis elegans 0.0
blast CAE71888 Hypothetical protein CBG18945 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504646.2 1 1005-1024
W01A11.3 1 1005-1024
Sequence
Target Sequence 
>C. ELEGANS:174629_AT
tactcaatattaatcacttaccctacagtttctttcgaatatccgaaaatcttccaaact
ttccccccaaaaaaatctccgtgttcaggtatttgtttcattctctctcttttttgtttc
tccactcatattgagaatattttatatctccacttaaatcggtgactttcctgtatatat
gatgatttatttgacaaaaaatgttatctgaatattctcatctgaaaagagaatccactt
ttgatgtcagttattttatttacgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCAATATTAATCACTTACCCTA 565 643 45 Antisense
TCACTTACCCTACAGTTTCTTTCGA 470 623 58 Antisense
CCTACAGTTTCTTTCGAATATCCGA 662 265 66 Antisense
TCGAATATCCGAAAATCTTCCAAAC 58 599 79 Antisense
AAAATCTCCGTGTTCAGGTATTTGT 613 133 116 Antisense
TCAGGTATTTGTTTCATTCTCTCTC 387 623 129 Antisense
TTTTTTGTTTCTCCACTCATATTGA 18 677 154 Antisense
ATATCTCCACTTAAATCGGTGACTT 138 21 188 Antisense
AATCGGTGACTTTCCTGTATATATG 134 169 201 Antisense
GAGAATCCACTTTTGATGTCAGTTA 180 391 273 Antisense
GATGTCAGTTATTTTATTTACGAAC 362 407 287 Antisense
Sequence Source Affymetrix Proprietary Database