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[174628_s_at]

Description CEK006GYR_rc /REP_DB=TREMBL Accession /GB=D27970 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 81      4grp_total > 49      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1266
1 2 3 4 range
A 34.1
(-2.9)
A 		1115.5
(2.5)
P 		1225.4
(3)
P 		22.1
(-3)
A 		1203
B 31
(-2.9)
A 		1113
(2.8)
P 		1158.7
(3)
P 		21.1
(-3)
A 		1138
C 3.9
(-3)
A 		1042.4
(1.9)
P 		1269.9
(3)
P 		29.4
(-2.9)
A 		1266
avr 23
(-3) 		1090.3
(2.4) 		1218
(3) 		24.2
(-3) 		1195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 937
1 2 3 4 5 6 range
A 369.4
(-1.8)
P 		950.6
(2.8)
P 		598.5
(0)
P 		978.2
(3)
P 		835.6
(1.9)
P 		216.5
(-3)
P 		762
B 422
(-1.7)
P 		757.7
(1.2)
P 		758.8
(1.2)
P 		965.6
(3)
P 		705.5
(0.8)
P 		269.2
(-3)
P 		696
C 466.3
(-1.6)
P 		786.9
(0.5)
P 		735.9
(0.2)
P 		1153.4
(3)
P 		794.1
(0.6)
P 		265.9
(-3)
P 		888
avr 419.2
(-1.7) 		831.7
(1.5) 		697.7
(0.4) 		1032.4
(3) 		778.4
(1.1) 		250.5
(-3) 		782
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 12.4
(-2.8)
A 		242.1
(1.5)
P 		320.3
(3)
P 		3.2
(-3)
A 		317
B 9.9
(-2.9)
A 		274.9
(3)
P 		268.5
(2.9)
P 		4.5
(-3)
A 		270
C 1.3
(-3)
A 		299.7
(1.1)
P 		442.6
(3)
P 		5
(-2.9)
A 		441
avr 7.9
(-2.9) 		272.2
(1.7) 		343.8
(3) 		4.2
(-3) 		340

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 68.1
(-2.7)
P 		338.1
(3)
P 		130.4
(-1.4)
P 		248.1
(1.1)
P 		252.1
(1.2)
P 		52.7
(-3)
P 		285
B 146.8
(-1.5)
P 		252.2
(1.9)
P 		184.3
(-0.3)
P 		255.7
(2)
P 		286.6
(3)
P 		100.4
(-3)
P 		186
C 172.8
(-0)
P 		240.1
(2.4)
P 		187.3
(0.5)
P 		231.9
(2.1)
P 		257
(3)
P 		89
(-3)
P 		168
avr 129.2
(-1.5) 		276.8
(3) 		167.3
(-0.4) 		245.2
(2) 		265.2
(2.6) 		80.7
(-3) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174628_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22151
Sequence Type Exemplar sequence
Representative Public ID CEK006GYR NCBI
Target Description CEK006GYR_rc /REP_DB=TREMBL Accession /GB=D27970 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077042 NCBI Caenorhabditis elegans H03E18.1 (H03E18.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000040478 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8507850:8513836:1 11/11 None
SNAP00000040474 ENSEMBL cdna:SNAP chromosome:CEL140:X:8508066:8513836:1 11/11 None
H03E18.1 ENSEMBL cdna:known chromosome:CEL140:X:8507813:8514059:1 gene:H03E18.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8513013-8514026(+) 96.72 100.0
Public Domain and Genome References
Gene Title
Ensembl H03E18.1
Entrez Gene 181103 Entrez gene
SwissProt Q94248 EMBL-EBI
WormBase CE37653 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07557 Hypothetical protein H03E18.1 [Caenorhabditis elegans] ref|NP_509443.2| H03E18.1 [Caenorhabditis elegans] 0.0
blast CAE74912 Hypothetical protein CBG22791 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 7.3E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 4.6E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 2.4E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 7.3E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 3.1E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 4.6E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 2.4E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 7.3E-10
Sequence
Target Sequence 
>C. ELEGANS:174628_S_AT
gcagttcgtgtgaaaactccggctgattgcttcgcagcttgttatgcattgagatgtaga
tcggccaatctcattgcacaaaggagaattcaatagctgtgaactttaccgagattctct
cattgattatcgccgacctgatatgattggttacgacgcttcaacagtatacttcgatgg
catcaactgcgatggtaccccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTTCGTGTGAAAACTCCGGCTG 170 313 13 Antisense
TGAAAACTCCGGCTGATTGCTTCGC 73 573 23 Antisense
GATTGCTTCGCAGCTTGTTATGCAT 4 435 37 Antisense
GTAGATCGGCCAATCTCATTGCACA 356 457 68 Antisense
CAATAGCTGTGAACTTTACCGAGAT 588 179 103 Antisense
ACTTTACCGAGATTCTCTCATTGAT 646 101 115 Antisense
TCTCATTGATTATCGCCGACCTGAT 386 611 130 Antisense
TCGCCGACCTGATATGATTGGTTAC 204 599 142 Antisense
GATTGGTTACGACGCTTCAACAGTA 596 435 157 Antisense
CAACAGTATACTTCGATGGCATCAA 397 185 174 Antisense
TGGCATCAACTGCGATGGTACCCCG 52 545 190 Antisense
Sequence Source Affymetrix Proprietary Database